Plant FIBer expression Database

HF.2 (Potri.009G061700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol HF.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26900 958 / 0 HISN4, HISHF, AT-HF HIS HF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G267400
[exp]
1071 / 0 AT4G26900 931 / 0.0 HIS HF (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032635
[exp]
981 / 0 AT4G26900 941 / 0.0 HIS HF (.1)
Lus10043113
[exp]
977 / 0 AT4G26900 937 / 0.0 HIS HF (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF00117 GATase Glutamine amidotransferase class-I
CL0036 TIM_barrel PF00977 His_biosynth Histidine biosynthesis protein
Representative CDS sequence
>Potri.009G061700.1 pacid=42771455 polypeptide=Potri.009G061700.1.p locus=Potri.009G061700 ID=Potri.009G061700.1.v4.1 annot-version=v4.1
ATGGAGGCAGCACCATTTACTTCTCCTTCTTCTACCTGCAAAACTTCATCCATCTCCTCCTCCTCTTCTCTTATATCTCTTTCAAAAATTTCTTACAGAA
ACCACTCTCCTTTTAAGTTCAAGTCACGTAGAAATCTCTCAGTTCGTGCTTCCAATGATGATTCAGTAGTGACTCTGCTTGATTATGGTGCTGGAAATGT
CCGCAGTGTCCGAAATGCCATTCTTCATCTCGGTTTCCAAATCAAAGATGTGCAAACTCCGAAAGACATTCTAAACGCAAGGCGTCTTATATTTCCTGGT
GTCGGGGCTTTTGCACCTGCTATGGATGTCCTTAACAACACTGGGATGGGAGAAGCACTGTGTAGCTACATTCAGAATGATCGCCCCTTTTTAGGCATTT
GTCTTGGACTTCAGCTACTTTTCGAGTCTAGCGACGAGAACGGTCCAGTGGGTGGTCTTGGTATGATTCCCGGAGTGGTGGGCCGTTTTGATTCCTCACA
TGGTTTTAGAGTGCCTCATATTGGTTGGAATGCTTTGCAAATCACTAAAGATTCTGAAATTTTGGATGACATTGGAAACCGCCATGTGTATTTTGTTCAC
TCTTATCGTGCCATGCCATCAAATGAAAATAAAGAGTGGATTTCCTCTACCTGCAATTATGGTGATGAATTTATAGCATCTGTTAGAAGGGGAAATGTGC
ATGCTGTTCAATTCCATCCAGAGAAGAGTGGAGATGTTGGTCTTTCAGTATTGAGGAGGTTTTTGCTTCCAAAGTCATCTTTGACAGGGAAGCGTACTGA
AGGGAAGGCATCGAAACTTGCAAAGAGGGTGATTGCTTGTCTTGATGTGAGGGCAAATGATGAAGGAGATCTTGTTGTAACCAAAGGAGACCAGTACGAT
GTAAGGGAACATGCAGATCAGAGTAAGGTTAGAAACCTTGGCAAGCCAGTGGAGCTTGCTGGACAGTATTACAGTGATGGTGCTGATGAGGTTAGTTTTT
TGAATATCACTGGCTTCCGTGATTTTCCCTTGGGTGATGTGCCAATGTTGCAGGTTTTGAGACGCGCTTCAGAAAATGTTTTTGTGCCATTGACAGTTGG
AGGTGGAATTAGAGATTTTACTGATTTAAATGGCAGGTATTATTCTAGCTTGGAAGTTGCATCAGAATATTTCAGGTCTGGGGCTGATAAGATTTCTATT
GGAAGTGATGCAGTCCATGCTGCAGAAGAATATCTGAAAACTAAGGTAAAGACTGGGAAGAGCAGCATAGAACAGATATCAAGAGTTTATGGAAATCAGG
CAGTTGTTGTAAGTATTGACCCTCGTAGAGTGTACCTTAATGATCCTAGTGATGTGGAGTTCAAGTCTATTAAGTTGACTAACCCAGGTCCAAATGGAGA
AGAGTATGCCTGGTATCAATGCACGATCAATGGTGGGCGAGAAGGTCGACCAATTGGAGCTTATGAACTTGCAAAAGCAGTTGAAGAGCTGGGGGCTGGA
GAAATATTACTAAACTGCATTGATTGTGATGGTCAAGGGAAAGGATTTGATATAGATCTAGTGAAGATGATCTCCGATGCCGTGAGCATCCCTGTGATTG
CAAGTAGTGGTGCAGGTGTTTCTGAACACTTCTCAGATGTGTTCTCAAAGACAAATGCATCTGCTGCCCTCGCTGCTGGCATTTTCCACAGGAAAGAGGT
GCCCGTTCAGTCTGTCAAAGAGCACTTGTTGAAGGAAGGCATAGAAGTCAGGATCTAA
AA sequence
>Potri.009G061700.1 pacid=42771455 polypeptide=Potri.009G061700.1.p locus=Potri.009G061700 ID=Potri.009G061700.1.v4.1 annot-version=v4.1
MEAAPFTSPSSTCKTSSISSSSSLISLSKISYRNHSPFKFKSRRNLSVRASNDDSVVTLLDYGAGNVRSVRNAILHLGFQIKDVQTPKDILNARRLIFPG
VGAFAPAMDVLNNTGMGEALCSYIQNDRPFLGICLGLQLLFESSDENGPVGGLGMIPGVVGRFDSSHGFRVPHIGWNALQITKDSEILDDIGNRHVYFVH
SYRAMPSNENKEWISSTCNYGDEFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLLPKSSLTGKRTEGKASKLAKRVIACLDVRANDEGDLVVTKGDQYD
VREHADQSKVRNLGKPVELAGQYYSDGADEVSFLNITGFRDFPLGDVPMLQVLRRASENVFVPLTVGGGIRDFTDLNGRYYSSLEVASEYFRSGADKISI
GSDAVHAAEEYLKTKVKTGKSSIEQISRVYGNQAVVVSIDPRRVYLNDPSDVEFKSIKLTNPGPNGEEYAWYQCTINGGREGRPIGAYELAKAVEELGAG
EILLNCIDCDGQGKGFDIDLVKMISDAVSIPVIASSGAGVSEHFSDVFSKTNASAALAAGIFHRKEVPVQSVKEHLLKEGIEVRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.009G061700
[exp]
0 1 HF.2
AT5G20890 TCP-1/cpn60 chaperonin family ... Potri.006G128600
[exp]
1.00 0.9607
AT1G68780 RNI-like superfamily protein (... Potri.008G114700
[exp]
9.38 0.9576
AT5G15860 ICME, ATPCME Isoprenylcysteine methylestera... Potri.004G104800
[exp]
14.17 0.8797
AT4G24660 ZF_HD ATHB22, MEE68, ... ZINC FINGER HOMEODOMAIN 2, MAT... Potri.019G081300
[exp]
14.38 0.9572
AT1G09870 histidine acid phosphatase fam... Potri.010G184600
[exp]
14.83 0.8716
AT3G20190 Leucine-rich repeat protein ki... Potri.007G002000
[exp]
18.43 0.8956
AT4G11720 HAP2, GCS1 GENERATIVE CELL-SPECIFIC 1, ha... Potri.001G109000
[exp]
20.49 0.9531
AT2G23790 Protein of unknown function (D... Potri.007G031400
[exp]
20.63 0.9084
AT3G61230 LIM PLIM2c PLIM2c, GATA type zinc finger ... Potri.001G107100
[exp]
22.91 0.9520
AT5G67580 MYB ATTBP3, TRB2, A... TELOMERE-BINDING PROTEIN 3, TE... Potri.007G005000
[exp]
23.02 0.9406 SMH905

Potri.009G061700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.