Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52110 267 / 1e-87 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G267600 [exp] 531 / 0 AT3G52110 264 / 4e-86 unknown protein Potri.006G054900 [exp] 155 / 3e-45 AT3G52110 115 / 3e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029522 [exp] 317 / 3e-106 AT3G52110 231 / 5e-73 unknown protein Lus10039611 [exp] 315 / 2e-105 AT3G52110 233 / 8e-74 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G061900.1 pacid=42772041 polypeptide=Potri.009G061900.1.p locus=Potri.009G061900 ID=Potri.009G061900.1.v4.1 annot-version=v4.1 ATGGAACCAGCAAAAATAGATTGGAAGAGAATAGACTCTGTCTTTGTAGAAGATAGATTGTATGAGAACTTAAATGCACCCAAATGGTTTGATTTCTTTG CTCCTGAAGACTCCACAGATGATGAAGCCTGGTTTTGCAGACCTGATTGTAACCATCCAAAGACAGCTGATGATTTCTTTAAAACCACACCAACTTCTAA GCTTTCAAGCTCAGGTGATAGAGCTAGAAGTAGAACCCCTCTCGACGACAAGAATCTAAGAGATGCAAAGTTGAAGAGAAGGGGGCAAAGTCAGTCTTCA TTTACATCATGTGATTATAAAGCCAAATTCAATGAAGATAGCGAAAATCGGAATCCAAATTTATCAACACCATCAAATTACCAGAAGTCTATGAAACAAA TGATCAAATCAAGCAGTGAAAAGAACAGACCTATTGATGATGTCCCACAAACCAGGGAAGAACCAAGGCTAAAAAGCACGTTATCGGCAAGGAATTTGTT TGCAGGGAAAGATATATTAGGCCATATTACTGAGTTTTGCAATGAATTGAAGAAGTTGGCAACGAGAGCGAGGGAAAAGGAGAGTTTAAATGAGAAGGGG AGTCAAGTGGGGGAGAAAAAAGATGGGGTAGTTGTGAATGAGGGTTCTAGAGAGGTTTTGGGAGAGTTGAATGTGAAGGAGAAAGAGAGAAAACCATTGC TTAACAATGATAGAGAGAAACCCGAAGGAAATGAAAAGGGAAGTGCCAAGCAAGGCAGGAAGAAAAGAGTTGATGATACAGAGAACATCCCAGTGCCTCT GAATTTGGCAAATGTGAAGAACAAAGGAGAGGAGCGCCTGCTGCAAATTCGGACCAATCCTCCTTCACCTCAATGCTTTTCTGCCAACCGTGCACCCGCC AAAACTACCCCTTCGAAGGCTTCCAGGTCCAGGCTTACGGAAAGGGGAATCCTTAAGGAACTGAAGAAGGATAAGGAAACCACCGAGGACAGAAGTCCTT TCATTTCTGATGGAAAAGAATCGAGAGCTTTGGATGTTTTCTGGTTCCTGAAGCCCTGCACGACGCTCTCCAGCTGA
AA sequence Show only first row Show all	>Potri.009G061900.1 pacid=42772041 polypeptide=Potri.009G061900.1.p locus=Potri.009G061900 ID=Potri.009G061900.1.v4.1 annot-version=v4.1 MEPAKIDWKRIDSVFVEDRLYENLNAPKWFDFFAPEDSTDDEAWFCRPDCNHPKTADDFFKTTPTSKLSSSGDRARSRTPLDDKNLRDAKLKRRGQSQSS FTSCDYKAKFNEDSENRNPNLSTPSNYQKSMKQMIKSSSEKNRPIDDVPQTREEPRLKSTLSARNLFAGKDILGHITEFCNELKKLATRAREKESLNEKG SQVGEKKDGVVVNEGSREVLGELNVKEKERKPLLNNDREKPEGNEKGSAKQGRKKRVDDTENIPVPLNLANVKNKGEERLLQIRTNPPSPQCFSANRAPA KTTPSKASRSRLTERGILKELKKDKETTEDRSPFISDGKESRALDVFWFLKPCTTLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52110			unknown protein		Potri.009G061900 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.001G180100 [exp]	1.73	0.8772	Pt-HSP91.2
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	3.16	0.8707
AT3G05520			Subunits of heterodimeric acti...		Potri.005G025300 [exp]	7.74	0.8580
AT5G26330			Cupredoxin superfamily protein...		Potri.001G268700 [exp]	9.79	0.7983
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Potri.001G206800 [exp]	20.14	0.8159	XYL4.2
AT1G09210		AtCRT1b	calreticulin 1b (.1)		Potri.013G009500 [exp]	21.63	0.8250
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076101 [exp]	24.14	0.8210
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	24.73	0.8071
AT1G22760		PAB3	poly(A) binding protein 3 (.1)		Potri.005G198500 [exp]	26.98	0.8311
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Potri.015G035500 [exp]	27.05	0.8482

Compare expression of checked genes

Potri.009G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.