Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63540 240 / 2e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT1G77090 48 / 1e-06 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G072400 [exp] 57 / 1e-09 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016419 [exp] 261 / 4e-88 AT3G63540 243 / 1e-82 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10018931 [exp] 49 / 1e-06 AT1G77090 359 / 1e-126 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10028633 [exp] 49 / 1e-06 AT1G77090 348 / 3e-122 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10003289 [exp] 42 / 0.0002 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10030326 [exp] 41 / 0.0004 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [poplar] [flax] Mog1p_PsbP PF01789 [poplar] [flax] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Potri.009G062500.1 pacid=42771526 polypeptide=Potri.009G062500.1.p locus=Potri.009G062500 ID=Potri.009G062500.1.v4.1 annot-version=v4.1 ATGGCTGCCATTCTCTCTTCATCAGCCCGCCTCTCCTCCACCTCCACCGCCCAAAAACCACCACAAACCCCATCGCTGTCCAAAACCCACCTGCCCATTT CCCCGCCCAACAAGCCGCACCTTACAACACTAGCTGCCACCATTGCAGCCACCACCATATTAACTGCCACCACCCCTTCCCTGGCAGACCCTTCACAAAC ATTCCACATCTACTACGGCACCGCAGCCAGTGCCGCCAATTACGGCGGATATGGTGGTAACTCGGACAAGAAAGCTTCTGCTGAGTACGTCTATGATGTC CCTGATGGATGGAAAGAACGTTTAGTCTCCAAAGTTGAAAAAGGTACTAATGGAACTGATAGCGAGTTCTACAATCCAAAGAAGAGAACTGAAAAGGAGT ACTTGACATATCTTGCTGGTTTCCGGCAGCTAGCTCCAAAAGATTCCGTGTTAAACAACTTGGCCTTGTCTGATGTGGACTTGCAAGACTTGATATCTGG TGCAGATAGTGTGGTGAGTGTAGAGGAGAAAGATGGGAATGGACAACTGTATTATGTTTATGAGATTGATGGGGTTGGGAAACATAGCTTGATCAAGGTT ACTTGTGCTAACAATAAGCTATATGCTCATTTTGTCAATGCACCAACACCTGAATGGAATAAGGATCAAGAGACTTTGAGGCATCTTCACCAGTCATTTA AGACTGTTGTCTAA
AA sequence Show only first row Show all	>Potri.009G062500.1 pacid=42771526 polypeptide=Potri.009G062500.1.p locus=Potri.009G062500 ID=Potri.009G062500.1.v4.1 annot-version=v4.1 MAAILSSSARLSSTSTAQKPPQTPSLSKTHLPISPPNKPHLTTLAATIAATTILTATTPSLADPSQTFHIYYGTAASAANYGGYGGNSDKKASAEYVYDV PDGWKERLVSKVEKGTNGTDSEFYNPKKRTEKEYLTYLAGFRQLAPKDSVLNNLALSDVDLQDLISGADSVVSVEEKDGNGQLYYVYEIDGVGKHSLIKV TCANNKLYAHFVNAPTPEWNKDQETLRHLHQSFKTVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Potri.009G062500 [exp]	0	1
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.005G206700 [exp]	1.00	0.9832	OEE2.1
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	2.44	0.9768
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Potri.009G156700 [exp]	2.82	0.9808
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.010G046300 [exp]	4.12	0.9615
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.019G083400 [exp]	7.00	0.9727	Pt-RPL21.3
AT3G26710		CCB1	cofactor assembly of complex C...		Potri.001G463200 [exp]	7.48	0.9664
AT1G16080			unknown protein		Potri.003G185754 [exp]	8.00	0.9717
AT3G12345			unknown protein		Potri.008G047800 [exp]	9.79	0.9728
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	10.00	0.9729
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	10.81	0.9474	Pt-GSA1.1

Compare expression of checked genes

Potri.009G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.