Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08505 452 / 2e-160 C3HZnF zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) AT5G01520 44 / 5e-05 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT5G56930 45 / 9e-05 C3HZnF EMB1789 embryo defective 1789, CCCH-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G268200 [exp] 625 / 0 AT3G08505 462 / 3e-164 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.004G134400 [exp] 340 / 2e-115 AT3G08505 326 / 2e-110 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) Potri.003G069700 [exp] 44 / 0.0001 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1) Potri.011G050700 [exp] 41 / 0.0006 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 40 / 0.001 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005859 [exp] 43 / 0.0001 AT3G47160 372 / 5e-132 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G062600.3 pacid=42771943 polypeptide=Potri.009G062600.3.p locus=Potri.009G062600 ID=Potri.009G062600.3.v4.1 annot-version=v4.1 ATGTCTAAAAGGTTACTATGCAAGTTCTTTGCTCATGGGGCGTGTTTGAAAGGGGAACATTGTGAATTTTCACATGACTGGAAAGATCCTCCAAATAATA TTTGTACATTTTATCAAAAAGGTATCTGTGTGTATGGCAGTCGATGCCGATATGATCATGTTAAACCTTCTAGGCCTGAATCTACTGCGTCGTCTTCTTT GACAGTTCTGGCCTCAACTTCTGTTTCCTTGGCCCTTCCTGCAAGAACTGTATCAAGTGGGGTGAGGACAGTGCTGGCGGTTCCTCCAGAGCTTTCAGCT TCAAGTAGACCCTTTATTGCTCCCAGTACGCCAGCATGGGATTTGGCGTCTGTGCAACTTGACTTCTTAGAAGATGGTGATGGTGAGGTTATACAGCCTA GGAATGTTAAACCAGCTGATCGATCTCTTTGTTCATTTGCTGCTGCTGGTAGCTGTCCTCGTGGAGATAAATGTCCTCATATTCATGGTGACCTATGTGC CTATTGTGGAAAGCATTGTTTGCATCCTTTCAGACCTGATGAAAGAAATGAGCATTTGAAAGCATGTGAGAAGAAGCAAAAGAACCTTGACTTATTAAAA TATAGTCAAGAAATAGAGTGCAGTGTATGCTTGGATCGTGTACTTTCAAAGCTCACAGCAGCTGAGCGGAAGTTTGGACTGCTATCAGAATGCAATCATC CATTCTGCATATCATGTATCAGGAATTGGCGTGGCAGTTCCCCAACCTCTGGAATGGATGTTAATTCTTCATTGAGGGCTTGCCCAATATGTCGCAAGCT TTCATACTTTGTTATCCCAAGTGTCATTTGGTATTCCACTAAAGAGGAAAAACAGGAAATAGTGGATACCTACAAGGAAAAACTCAGGTCGATAGATTGC AAACACTTTGACTTTGGGAATGGGAACTGCCCATTTGGAACCAGCTGCTTTTACAAGCATGCGTATCGAGATGGCCGCTTGGAGGAAGTGGTTTTACGTC ATCTTGGAGCTGAAGATGGACAGGGTGTGATAGCTAAAAATATCAGGCTGTCTGATTTCCTTGGTGGCTTGCAAATAAGGTGA
AA sequence Show only first row Show all	>Potri.009G062600.3 pacid=42771943 polypeptide=Potri.009G062600.3.p locus=Potri.009G062600 ID=Potri.009G062600.3.v4.1 annot-version=v4.1 MSKRLLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICVYGSRCRYDHVKPSRPESTASSSLTVLASTSVSLALPARTVSSGVRTVLAVPPELSA SSRPFIAPSTPAWDLASVQLDFLEDGDGEVIQPRNVKPADRSLCSFAAAGSCPRGDKCPHIHGDLCAYCGKHCLHPFRPDERNEHLKACEKKQKNLDLLK YSQEIECSVCLDRVLSKLTAAERKFGLLSECNHPFCISCIRNWRGSSPTSGMDVNSSLRACPICRKLSYFVIPSVIWYSTKEEKQEIVDTYKEKLRSIDC KHFDFGNGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAEDGQGVIAKNIRLSDFLGGLQIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.009G062600 [exp]	0	1
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	4.00	0.7771
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.007G080400 [exp]	7.07	0.7765
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	11.95	0.7154
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	22.20	0.7038
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	38.67	0.6774
AT1G60890			Phosphatidylinositol-4-phospha...		Potri.003G019100 [exp]	38.74	0.7010
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	39.49	0.6605
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	52.21	0.6569	ATHMG.2
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	52.24	0.6772
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	60.22	0.6803

Compare expression of checked genes

Potri.009G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.