Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37980 214 / 6e-70 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G39330 214 / 9e-70 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37970 210 / 4e-68 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 206 / 1e-66 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT2G21730 196 / 3e-62 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 195 / 4e-62 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G34230 147 / 2e-43 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT3G19450 143 / 5e-42 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G72680 135 / 3e-39 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G063400 [exp] 309 / 9e-107 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063300 [exp] 284 / 6e-99 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 271 / 3e-92 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G065300 [exp] 268 / 9e-91 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.006G199100 [exp] 251 / 2e-84 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G078300 [exp] 245 / 1e-81 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G307200 [exp] 214 / 1e-69 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 184 / 1e-57 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.002G018300 [exp] 170 / 2e-52 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035956 [exp] 260 / 1e-87 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 256 / 4e-86 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 230 / 9e-76 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10000143 [exp] 185 / 4e-59 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002089 [exp] 184 / 8e-58 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 163 / 1e-49 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 161 / 5e-49 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002812 [exp] 154 / 3e-46 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 153 / 6e-46 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 153 / 6e-46 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.009G062901.1 pacid=42771267 polypeptide=Potri.009G062901.1.p locus=Potri.009G062901 ID=Potri.009G062901.1.v4.1 annot-version=v4.1 ATGGGGGTCAAGGTGACAGTTATTAGCACCTCACCCAACAAGAAACAAGAAGCCCTCGAGCATCTTGGTGCCGACTCATTTTTGGTTAGCCGTGATCAGG ATCAGATGCAGGCTGCAATGGGCACAATGGATGGTGTAATTGACACGGTGTCGGCCATGCATCCTATCTTGCCTTTGATTAGTCTATTGAAGACTCAAGG AAAGCTGGTTTTGGTTGGTGCGCCTGCGAAACCACTTGAGCTACCAGTGTTTCCTTTGATCGTGGGAAGAAAAATAGTGGGTGGGAGTGCTGGTGGAGGA ATGCAGGAAACACAAGAGATGATTGATTTTGCTGCTAAGAACAACATAACAGCAGATATCGAGTTGATTTCAATGGATTATGTGAACACTGCCATTGAGC AGCTATTGAAAACTGATGTTAGGTATCGATTTGTCATTGATATTGGCAACACAATGAAAAATTGA
AA sequence Show only first row Show all	>Potri.009G062901.1 pacid=42771267 polypeptide=Potri.009G062901.1.p locus=Potri.009G062901 ID=Potri.009G062901.1.v4.1 annot-version=v4.1 MGVKVTVISTSPNKKQEALEHLGADSFLVSRDQDQMQAAMGTMDGVIDTVSAMHPILPLISLLKTQGKLVLVGAPAKPLELPVFPLIVGRKIVGGSAGGG MQETQEMIDFAAKNNITADIELISMDYVNTAIEQLLKTDVRYRFVIDIGNTMKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.009G062901 [exp]	0	1
AT5G25050			Major facilitator superfamily ...		Potri.006G266000 [exp]	6.63	0.8033
AT2G18160	bZIP	GBF5, ATBZIP2	G-BOX BINDING FACTOR 5, basic ...		Potri.005G119300 [exp]	10.58	0.7992
AT5G65030			unknown protein		Potri.005G076100 [exp]	18.33	0.7725
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022700 [exp]	29.59	0.7087
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	29.93	0.8076
AT2G16060		ATGLB1, ARATHGL...	CLASS I HEMOGLOBIN, hemoglobin...		Potri.009G110901 [exp]	32.78	0.7905
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.018G145580 [exp]	34.89	0.7773
AT1G22540			Major facilitator superfamily ...		Potri.013G106400 [exp]	39.64	0.8027
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	40.29	0.8007
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	41.42	0.7791

Compare expression of checked genes

Potri.009G062901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.