Plant FIBer expression Database

Potri.009G063200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G268400
[exp]
38 / 3e-05 ND /
Potri.009G062700
[exp]
37 / 6e-05 ND /
Potri.016G052301
[exp]
36 / 0.0002 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016421
[exp]
39 / 1e-05 ND /
Lus10019698
[exp]
36 / 0.0002 ND /
PFAM info
Representative CDS sequence
>Potri.009G063200.1 pacid=42771058 polypeptide=Potri.009G063200.1.p locus=Potri.009G063200 ID=Potri.009G063200.1.v4.1 annot-version=v4.1
ATGGCATTTGCTGCAATGAAGTTGTTTGCTGCTGCTGTTGTCATGGCAATGCTTGCCAGTGTTGCTGTTTCCGCCCAAGATCTTGGAGAGTTAGCGCCAG
CGCCAGCTCCTGGAATGGACAAGGGAGCTGCTTCCTTTTCTCTTGGGATGTCTGGGGCTCTTATCTGCTCTTCTCTCTTCTTGTCTATGCTTTCTCTTTT
GAGGCACTAG
AA sequence
>Potri.009G063200.1 pacid=42771058 polypeptide=Potri.009G063200.1.p locus=Potri.009G063200 ID=Potri.009G063200.1.v4.1 annot-version=v4.1
MAFAAMKLFAAAVVMAMLASVAVSAQDLGELAPAPAPGMDKGAASFSLGMSGALICSSLFLSMLSLLRH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G063200
[exp]
0 1
AT1G10200 LIM WLIM1, SF3 WLIM1, GATA type zinc finger t... Potri.015G072400
[exp]
4.24 0.7234
AT2G37180 PIP2C, PIP2;3, ... RESPONSIVE TO DESICCATION 28, ... Potri.016G089500
[exp]
9.74 0.6493 Pt-PIP2.2
AT2G31940 unknown protein Potri.009G024500
[exp]
14.96 0.7021
AT3G21510 ATHP3, AHP1 histidine-containing phosphotr... Potri.005G040400
[exp]
15.65 0.7066 Pt-HPT2.3
Potri.005G004800
[exp]
24.55 0.7179
AT2G20390 unknown protein Potri.014G193150
[exp]
24.91 0.6896
Potri.015G107050
[exp]
30.21 0.6853
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Potri.009G121300
[exp]
30.70 0.6118 Pt-RD19.2
AT5G13180 NAC VNDIP2, ANAC083... VND-interacting 2, NAC domain ... Potri.015G102100
[exp]
31.17 0.7021
AT3G24060 Plant self-incompatibility pro... Potri.001G053200
[exp]
33.46 0.6893

Potri.009G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.