Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03940 280 / 3e-89 HXXXD-type acyl-transferase family protein (.1) AT3G29670 273 / 1e-86 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT1G03495 271 / 1e-85 HXXXD-type acyl-transferase family protein (.1) AT3G29635 243 / 5e-75 HXXXD-type acyl-transferase family protein (.1) AT3G29680 242 / 9e-75 HXXXD-type acyl-transferase family protein (.1) AT5G61160 239 / 9e-74 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39080 233 / 3e-71 HXXXD-type acyl-transferase family protein (.1) AT5G39090 219 / 7e-66 HXXXD-type acyl-transferase family protein (.1) AT5G39050 214 / 8e-64 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29590 207 / 9e-62 AT5MAT HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 388 / 2e-131 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 365 / 2e-122 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 275 / 3e-87 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 275 / 4e-87 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 274 / 8e-87 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 273 / 1e-86 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 272 / 5e-86 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 270 / 2e-85 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 267 / 3e-84 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033754 [exp] 318 / 5e-104 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 312 / 1e-101 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 310 / 6e-101 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 266 / 2e-82 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 244 / 2e-75 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 238 / 6e-73 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 233 / 4e-71 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 217 / 6e-65 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 217 / 6e-65 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 216 / 2e-64 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.009G063500.1 pacid=42771751 polypeptide=Potri.009G063500.1.p locus=Potri.009G063500 ID=Potri.009G063500.1.v4.1 annot-version=v4.1 ATGGCTAAATCCTCCACAGTTAAGGTTGTAGAGCACTGCATAGTCTCTCCACCACCCAATTCAGCTCCACCAACTATTCTTCCACTAACTTTCTTGGACA TACCATGGCTATTTTTCTCTCCAAGCCAACCTCTCACTTTCTATGAATATCCACACTCCACCTCTCACTTCCTATCCACCACTATCCCCAGCCTCAAGCA CTCTCTATCCCTTGCTCTCCAACATTTCTTTCCTTTTGCTGGAAACCTCGTTTTTTCCCCAGCAGGATCCACTAAGCCTAACATTGTCTACAATGATGGA GATTATGTCACATTGACAGTTGCTGAGTCTAGTGGTGATTTCAGTTACTTTACTAGTAATTATGCAAGAGATGTCAATGGGTTTTACCCTCTTGTGCCTA AACTGGCTACTACCAGTACTGTAGCAACTGGCACACGAGAAGAAGTGGTTCCACTGTTTGCCGTCCAGGTTACTGTTTTCGCAAATTGTGGGATTTGCAT TGGTCTTGCTTATCATCATGTGGTTGCCGATGGAAGGACATTCAACAATTTTATCAAGGCATGGGCCTTTTTAAGCGCACATGACTGTTCTCTCTCCATC GCTTCATTACCATCTTACAATCGGTCAGTGATAAAAGATGAACATGGGCTCGAGGAGATTTTCTTGAAGGAATTGTGGAAGAGAAAATCTTCACAAGAAA TGGTTCTAGGACCTGAAGCCCAAGTAGATTTGCCAAGTATGGTCCGAGCCACGTTCGTGGTGAGATTGGCAGATATGGAGAGGATCAAGAATTGGATAGT TGTTCAATGCAAGAGCAAGAATCAACCACAACCTGTACATTTATCTCCATATGTGTTAACATGTGCTTTTCTTTGGGTTTGTTTAGTGAGAGCTAAAATT CAGAGGGGTGGAAGTGAAAACCACTGCTATTCAAGGGGGGAGGATCCGATTTATCTTGGCTTTATTGCTGGTGGTATGACCCGGATAGACTTTCCGGTAC CCACCACATATTTTGGTAACTGTGTTGGGTTTGGTCGGTCCACGGCAACCAGGAATGAACTAATGGGAGAAGATGGGATAATTGTGGCTGCAAATGTGAT TGGAAATACAATTAGAAGGTTGGATAAAGAAATTTTTGGTGGGGCGGAAAAATGGATTTCAGAATGGGAGGTAATGTTTGGGTCGGTGATCCATGTTATT GTTTCCGGGTCTCCGAAGTTGAATCTCTATGAGACGGATTTTGGGTGGGGGAGGCCTAAGAAGATAGAGGATATTTCGATCGATAAAATAAGAGCCATTT CACTCCTTGAGAGCAGGGACGAAAAGGGTGGAATTGAGCTAGGCTTAGCCTTCCCCACGGGTGAAATGGATGCTTTCAAGACTCTCTTTATTCAAGAACT CGAGGCTCTTCAATAA
AA sequence Show only first row Show all	>Potri.009G063500.1 pacid=42771751 polypeptide=Potri.009G063500.1.p locus=Potri.009G063500 ID=Potri.009G063500.1.v4.1 annot-version=v4.1 MAKSSTVKVVEHCIVSPPPNSAPPTILPLTFLDIPWLFFSPSQPLTFYEYPHSTSHFLSTTIPSLKHSLSLALQHFFPFAGNLVFSPAGSTKPNIVYNDG DYVTLTVAESSGDFSYFTSNYARDVNGFYPLVPKLATTSTVATGTREEVVPLFAVQVTVFANCGICIGLAYHHVVADGRTFNNFIKAWAFLSAHDCSLSI ASLPSYNRSVIKDEHGLEEIFLKELWKRKSSQEMVLGPEAQVDLPSMVRATFVVRLADMERIKNWIVVQCKSKNQPQPVHLSPYVLTCAFLWVCLVRAKI QRGGSENHCYSRGEDPIYLGFIAGGMTRIDFPVPTTYFGNCVGFGRSTATRNELMGEDGIIVAANVIGNTIRRLDKEIFGGAEKWISEWEVMFGSVIHVI VSGSPKLNLYETDFGWGRPKKIEDISIDKIRAISLLESRDEKGGIELGLAFPTGEMDAFKTLFIQELEALQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.009G063500 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.004G032100 [exp]	1.73	0.9819
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.004G030800 [exp]	10.77	0.9793
					Potri.002G252200 [exp]	13.34	0.9800
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	13.74	0.9795
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.004G064500 [exp]	26.26	0.9777
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Potri.015G086900 [exp]	27.20	0.9772
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	28.37	0.9776
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070900 [exp]	29.08	0.9775
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.009G140900 [exp]	34.46	0.9761
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G144900 [exp]	39.03	0.9760

Compare expression of checked genes

Potri.009G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.