Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12640 419 / 5e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G65260 74 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G51120 69 / 9e-14 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3) AT5G10350 66 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G27330 57 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 61 / 4e-09 nucleotide binding;nucleic acid binding;RNA binding (.1) AT1G22910 55 / 4e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G22330 55 / 8e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G24350 56 / 9e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G74230 54 / 1e-07 GR-RBP5 glycine-rich RNA-binding protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269200 [exp] 1095 / 0 AT3G12640 432 / 3e-143 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G145050 [exp] 96 / 3e-22 AT2G24350 107 / 4e-27 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G073200 [exp] 77 / 9e-16 AT5G10350 292 / 2e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.007G095800 [exp] 75 / 4e-15 AT5G10350 285 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.006G079800 [exp] 76 / 5e-14 AT2G24350 102 / 8e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G115100 [exp] 70 / 3e-13 AT5G65260 271 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G051600 [exp] 69 / 5e-13 AT5G65260 288 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G110800 [exp] 69 / 6e-13 AT5G51120 266 / 1e-90 polyadenylate-binding protein 1 (.1.2.3) Potri.001G311600 [exp] 66 / 5e-12 AT5G65260 238 / 2e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037701 [exp] 619 / 0 AT3G12640 412 / 2e-135 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015696 [exp] 610 / 0 AT3G12640 417 / 1e-136 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10009323 [exp] 68 / 5e-13 AT5G65260 268 / 2e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015840 [exp] 68 / 8e-13 AT5G65260 261 / 9e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032510 [exp] 69 / 1e-12 AT5G65260 278 / 2e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032509 [exp] 69 / 6e-12 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10043008 [exp] 63 / 6e-11 AT5G65260 278 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10018277 [exp] 62 / 1e-09 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 59 / 1e-08 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10041423 [exp] 53 / 2e-07 AT3G54770 181 / 3e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF01480 [poplar] [flax] PWI PWI domain
Representative CDS sequence Show only first row Show all	>Potri.009G063800.1 pacid=42770838 polypeptide=Potri.009G063800.1.p locus=Potri.009G063800 ID=Potri.009G063800.1.v4.1 annot-version=v4.1 ATGGGAAGCGTGGATAAAAAAATTAGGGTTAATTTCAGTGGAGATGGAGCCGCTTTGTTGAGAGATAGAGTTAGCGAGAAGCTTAAGGAGTTTATGGGCG ATTACACTGACGATGTTCTTGTGGAATATGTAATTGTCTTGCTGAGAAATGGCAGGGATAAGGAAGAAGCAAGAAATGAATTGAATGTTTTTTTGGGGGA TGACAGTGAGTCTTTTGTATCCTGGCTGTGGGATCACTTGGCTACAAATCTGGATTTGTATGTACAGCCTCAGGAGACTGGCACAGATGAAGTGGCCAGA ACAAATCCCACACTGGTAGAACAGACTGGGGGGAATGAATCTCATCATATGGATTCTGAACCCCAAAAAGTGAAGCCTGATAATTCATATAGAGGCCGGC ATAAAAGAGAATGGAAAGGTGTAGTGAGAGATGTGAACCACCGGCCTCCTCTTCGAAGCTCCGTGGTTGTTAATATTCATCAGGAGGAAAAAACTCATTG TGAAGTCAGTCATGCAAGAAGATCTACATCTCCCCAACCTCCACAGCAGAAGAAAAGGAGTCAGCATGATGAGCGACAACATGTGAAGAGGGACACAGTT TCTCAAGCAACCAGTCGTGCTCCTCGACGACTACTTCAGTTTGCAGTGAGAGATGCTGTCAGAACTTTGAGACCATCTGGCATGGTAAAAGAACCCTTGC TGAAGCGTCTTCGCTCAGTAGTGTCTACATCTACTGAAGACACATCATTGGTTGATCGTCCTAGGAGGCTCCAGTCAATTGCAAGAGTTCCAAACCCCAT GGCTACTGTATTAAAAGCTGTGCAAGAAGCTGCTGAAGATGTAGTAAAAGTTAAATCTTCAGGAAGTGTGTTTGACCGGCTTGGTCGTGATATGGATGCA TCATTGACCACTGAACAAGTCACTGAATTTAGAGATGCTGCTGTTGAAGATGACGAATATGAAGAACTGAATGGAATTCAGGAGCAAAACCACTCAAACT ATCCTCAGAGAAGCAAGTTCTGTGGACATGCAGGGGCTATGAATATGATGGAGCATGAAGCTGGATTGACTTCTGATTTGATGTCTGATAATGAAGGTTA TGATGATGCCAATGTTGTGGATCATAGGGTTATGGATGTTTCTCATACTGGCACATCTTACGGAAGCAAGGGTGAGGATGCACTCATGTCAAAATACAAT TTAGCTAAGGATCAGTCAGCTGCAAACACTTCTCTTAAAATAGTAAACATTTCTGTGAATGTGAATACATGGAGGCCACCTCATTATCAAGAACCCAGGG ATGCTGCAATGGATAATCAGAAATCGGTTCAGAATAATGAAGGAAATGCTGGGAGATTTGGTGCTAAGCTAATGAAGGAGGTTAGCAAGCCTGTCTCAGT TGGTAATGGAAATGCAAAACCTGCTGGTGGTATTCAGCAAGAACCTCAGAAGCCTCCATCATCTGCATCCGGTCCATACACTGCAGGTTGCCCCTTAGAA GATGCTGATTCTCGAACCATTTTCGTTAGCAATGTTCATTTTGCTGCAACTAAGGACAGTCTATCTCGGCATTTTAACAAGTTTGGTGAAGTACTCAAAG TGGTTATAGTAACTGATGCAGCAACAGGACAACCAACAGGGTCAGCTTATGTGGAATTTATGCACAAAGAGGCAGCGGACAATGCATTGTCTCTTGATGG CACCTCATTTATGTCACGTATTCTGAAGGTCATGAAGAGAAGCTCTTCCAACCAAGAAGCTAATCTTATTACAACATGGCCCCGCATTGCCCGTGGATCT ACGTATACTGCTGGTAGGTTTTCTAGAGCAGCTTTTCCAAGAGGCACTCCTGCTGCATTTAGGCCTCGGCTCCATGTGAAACCTGGTGCGAGAAGTTTGC AGTGGAAGCGAGATGCTCAAGCTACTCCAGCTGGGAGTAGTGCTGCAGTCTCTGGCAGCAGTGTTGTCTCCCCTTCTGTCCGCAGTCTCACCTATGTCCG CACAGAACCAAAACCAGATCGTTATTCGGGTACTGCTGGAGTTTGA
AA sequence Show only first row Show all	>Potri.009G063800.1 pacid=42770838 polypeptide=Potri.009G063800.1.p locus=Potri.009G063800 ID=Potri.009G063800.1.v4.1 annot-version=v4.1 MGSVDKKIRVNFSGDGAALLRDRVSEKLKEFMGDYTDDVLVEYVIVLLRNGRDKEEARNELNVFLGDDSESFVSWLWDHLATNLDLYVQPQETGTDEVAR TNPTLVEQTGGNESHHMDSEPQKVKPDNSYRGRHKREWKGVVRDVNHRPPLRSSVVVNIHQEEKTHCEVSHARRSTSPQPPQQKKRSQHDERQHVKRDTV SQATSRAPRRLLQFAVRDAVRTLRPSGMVKEPLLKRLRSVVSTSTEDTSLVDRPRRLQSIARVPNPMATVLKAVQEAAEDVVKVKSSGSVFDRLGRDMDA SLTTEQVTEFRDAAVEDDEYEELNGIQEQNHSNYPQRSKFCGHAGAMNMMEHEAGLTSDLMSDNEGYDDANVVDHRVMDVSHTGTSYGSKGEDALMSKYN LAKDQSAANTSLKIVNISVNVNTWRPPHYQEPRDAAMDNQKSVQNNEGNAGRFGAKLMKEVSKPVSVGNGNAKPAGGIQQEPQKPPSSASGPYTAGCPLE DADSRTIFVSNVHFAATKDSLSRHFNKFGEVLKVVIVTDAATGQPTGSAYVEFMHKEAADNALSLDGTSFMSRILKVMKRSSSNQEANLITTWPRIARGS TYTAGRFSRAAFPRGTPAAFRPRLHVKPGARSLQWKRDAQATPAGSSAAVSGSSVVSPSVRSLTYVRTEPKPDRYSGTAGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	0	1
					Potri.003G027116 [exp]	2.64	0.8671
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.016G084100 [exp]	3.87	0.8544
					Potri.003G027318 [exp]	4.69	0.8591
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	7.74	0.8457
					Potri.001G298266 [exp]	8.66	0.8485
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.005G029000 [exp]	9.38	0.8281
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.002G152100 [exp]	10.39	0.8252	PLDBETA1.1
					Potri.001G298233 [exp]	12.68	0.8421
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	13.67	0.7849
AT5G07610			F-box family protein (.1)		Potri.008G016150 [exp]	13.85	0.8100

Compare expression of checked genes

Potri.009G063800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.