Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52115 367 / 2e-119 AtCOM1, ATGR1 gamma response gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269700 [exp] 998 / 0 AT3G52115 353 / 7e-114 gamma response gene 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037704 [exp] 440 / 1e-147 AT3G52115 341 / 5e-110 gamma response gene 1 (.1) Lus10015699 [exp] 435 / 1e-145 AT3G52115 334 / 5e-107 gamma response gene 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G064200.2 pacid=42770738 polypeptide=Potri.009G064200.2.p locus=Potri.009G064200 ID=Potri.009G064200.2.v4.1 annot-version=v4.1 ATGAAGGGAGAGCTCCTGGAGTGTTGTCCGAAACTAGAAGCCGGTGATGTCTCAGGGCTTAGTACTATACTGGTAGCAACAATTCAGGAAGCAAAAGACA GGATTTCTCAAATAGAATACATATTCTGTAACCAGCTTTACCCGAATTTCCAAACGAAATCCAAGAGCTTGCTGAAAATTTATTCGGATGCGGAAGAGGT GTGGAAAGAAAAGGAAAAACATCTCTACGAGCTTATTGAGAAGCTTCGGGTTGAGAAGCAGGAAGTTGTTGAAGAAAACAAGCTTCTCAAGGTTGGGAAG GAAAAGTCGGCGGGGGAGCCGAATGAGAAGGCAAATGTGCTGCTTGCTATACCAAGAAATCGAGAATCAAAAATTGATGAGCTGGAGCAGGAGGTTATGA AGAAGTATAAGGAAGTTGATGAGGGAATGGAATTGCAGAATACGTTACTTCAGTTGGTTCAAACGAAGGCAGCTATGATTGTGGATAAAGGAAGGGAATT GAAAACGAATGAGGAGAAGACCAATGAGCTGCTTGCTAAAGTGAAGAGCTTAGAGAAACATGTTGAAGAGCTACAAGAGGAGGATAGGAAGAAGACAGAA AAGGTAGCAGAGAAAACAGAGTTGGCAAACAGTTTGAGCAAGAAAGCTTCGTCTCTATTGAAATTGATTGAGGATAACGAGAAGTTGAGGACTGAGCATG AAAAGGAGAAGGAACAACTAATGTACAAAGTGGAATGTCTGGAGGAGAATCTTGGTGGACTTAAAAAAAAGTTTTTGGAAAAAACGGAAGAAATTGAAGA GGGGAGAGTATTGCAAGCTGAATTACTTCAACAAATTGAAATGAATGCTGTGGAAATCTTGAAGCAAAAAGAACAGTTGGAGAAGTCTGAGAATGATAAA AAGGTACTTTTAGACAAAGTGAATGGTTTAGAGGAGAAGGTCAATGAACTACAGGCAAATCTCAGTAGCAGCGTTAAAGAGGCTGAAAGAAAGGTTTCGT ATGAAAACTTGCTTCACCGAATTGAATTGAAGGATTGTGAGTTGCTGGCTGAGAAGAGGAAGATGAGTGATTTGCATGGTCTTTACATAAAGTTGAGGTC TCAATATAAATATCTCTGCACAAAGTCTGGTCTTACTATGAAGAATATGCTTAATGACAAATTAGAAGATGAAAGTGGTTCCTTGAAGCATCAACTGACA ACTTCAACTGATCGTGGGAACAAAAATGTTGATGCATCTGCCGCGCCTTGTGAGATGAAGGAAGTCAAGACTGAAAATGAATTTAGCAATGTCTTGGTGG ACAATGAAGTTGTGAAATCAATTCCAATCGCAAACTTCAAATCTCCGACTTCTGGTTATGCAGCACCAAAATGTCCTCCCACTGTAAAATCCGCTCGAAT AATTGGCACAAAGCGACCTGCATCTAGTTGGATAGATACTAGATCTCGTCAAGGCAAAGATGGGCCTGACCCTCACGATGATTTCCTTGATACCCCATTG GAGAACCTTAGGGCAGACTTGGACAAAGCCATGAAGGAAGAAGCTCATGATCCTCACGTTGTAGTTCAGAAAGAAAAAAACATGGACCCTGGCAGTTCAG ATGATGAAACGCAGGATGCAAATGTTGATCGTAGCCCTGGGGAGCAGTGGATGCCAGTTCCAGTAGGTGGAAAAAGAGGTTTCAAGTATGTTGAACCAGT TCGAAAGAAAGCTGAGAGGCAAAATTTGAAAGGAGTTCAATGCAAGCAGTGCAAAAAATTCTATGATGCAGTTCTTCCCAATAATGGAGGTAAGTCTGCT GATGGTAATCAACAGAACGTTCGGTGTGAACATCATGATGGTGTTTCTAGGCATCGATACAAGTATGCCCCTCCCTTGACTCCTGAGGGATTTTGGAATA TTGGATTTGAATCTGAAATGTGA
AA sequence Show only first row Show all	>Potri.009G064200.2 pacid=42770738 polypeptide=Potri.009G064200.2.p locus=Potri.009G064200 ID=Potri.009G064200.2.v4.1 annot-version=v4.1 MKGELLECCPKLEAGDVSGLSTILVATIQEAKDRISQIEYIFCNQLYPNFQTKSKSLLKIYSDAEEVWKEKEKHLYELIEKLRVEKQEVVEENKLLKVGK EKSAGEPNEKANVLLAIPRNRESKIDELEQEVMKKYKEVDEGMELQNTLLQLVQTKAAMIVDKGRELKTNEEKTNELLAKVKSLEKHVEELQEEDRKKTE KVAEKTELANSLSKKASSLLKLIEDNEKLRTEHEKEKEQLMYKVECLEENLGGLKKKFLEKTEEIEEGRVLQAELLQQIEMNAVEILKQKEQLEKSENDK KVLLDKVNGLEEKVNELQANLSSSVKEAERKVSYENLLHRIELKDCELLAEKRKMSDLHGLYIKLRSQYKYLCTKSGLTMKNMLNDKLEDESGSLKHQLT TSTDRGNKNVDASAAPCEMKEVKTENEFSNVLVDNEVVKSIPIANFKSPTSGYAAPKCPPTVKSARIIGTKRPASSWIDTRSRQGKDGPDPHDDFLDTPL ENLRADLDKAMKEEAHDPHVVVQKEKNMDPGSSDDETQDANVDRSPGEQWMPVPVGGKRGFKYVEPVRKKAERQNLKGVQCKQCKKFYDAVLPNNGGKSA DGNQQNVRCEHHDGVSRHRYKYAPPLTPEGFWNIGFESEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.009G064200 [exp]	0	1
AT3G59670			unknown protein		Potri.013G127100 [exp]	1.00	0.8518
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	3.87	0.8209
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Potri.007G108200 [exp]	9.16	0.8329
AT2G27590			S-adenosyl-L-methionine-depend...		Potri.004G184400 [exp]	24.06	0.6598
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	29.59	0.7764	Pt-CPP1.22
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	33.40	0.7433
AT2G16650		PRORP2	proteinaceous RNase P 2 (.1)		Potri.009G145200 [exp]	33.82	0.7253
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	34.87	0.7345
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	35.49	0.7647	ALC.2
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	37.41	0.7763

Compare expression of checked genes

Potri.009G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.