Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-DRT100.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12610 480 / 1e-170 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G20820 479 / 2e-170 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 459 / 3e-162 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 190 / 5e-56 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 180 / 2e-52 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 182 / 5e-52 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 178 / 2e-51 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 171 / 4e-49 Leucine-rich repeat (LRR) family protein (.1) AT3G11080 172 / 1e-47 AtRLP35 receptor like protein 35 (.1) AT1G33610 166 / 7e-47 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269800 [exp] 634 / 0 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 477 / 2e-169 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 469 / 3e-166 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 180 / 2e-51 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G040200 [exp] 174 / 1e-48 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 170 / 2e-47 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G049600 [exp] 163 / 4e-47 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.013G098900 [exp] 166 / 8e-47 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G049400 [exp] 162 / 9e-47 AT5G06860 372 / 2e-129 polygalacturonase inhibiting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037705 [exp] 527 / 0 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 517 / 0 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 506 / 0 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 484 / 2e-172 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 456 / 8e-161 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 413 / 1e-145 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 246 / 2e-81 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 174 / 3e-51 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 173 / 8e-51 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10014174 [exp] 169 / 3e-46 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.009G064300.1 pacid=42771601 polypeptide=Potri.009G064300.1.p locus=Potri.009G064300 ID=Potri.009G064300.1.v4.1 annot-version=v4.1 ATGAGTGCGTTACTCACAACACTAGCTCTCCTCTTCACCCTCATCTACACAGTCACTTCCAGCTGCACTCCATCAGACCTAGCAGCATTACTAGCCTTCA AGTCTTCCCTCAATGAACCATACTTAGGCATCTTCAACACATGGTCAGGCACTAACTGCTGCTCCAACTGGTACGGCATCAGCTGTGACCCCACCACAGG CAGAGTCGCAGACATCAACCTGCGAGGTGAATCCGAAGACCCCATCTTCGAGAAGGCTGGCAGGTCAGGCTACATGACTGGTTCCATCAACCCTTCATTA TGTAAACTTGACAGGCTCTCTACGCTCATTCTGGCAGACTGGAAAGGGGTTTCGGGTGAAATTCCTGGATGTGTTGCTTCTTTAAGTAATCTCCGAATCT TGGATCTTATAGGTAACCAAATATCTGGCAAGATTCCTGCAAATATTGGGAATCTACAGAGACTTACTGTTTTAAACCTTGCTGATAATGGACTCACTGG AGAGATCCCTGCTTCTCTCACAGCTTTGGCAAATATGAAGCATTTGGATCTTAGCAGCAATAAGTTGACTGGTCAGTTGCCAGCTGATTTTGGTAACTTG AAAATGCTTAGCCGTGCATTGTTGAGTAAAAACCAGCTGAGTGGAGCAATACCAAACTCTATATCGGGCATGTATCGGCTAGCAGACTTGGATTTGTCTG TTAATAAAATCTCGGGTTCGGTACCGGGCTGGTTAGGCAGCATGCGGGTTCTTTCTACGCTTAATCTGGATAGTAACATGATTTCCGGTCAATTGCCAGC ATCTTTGTTGAGCAGTACCGGTTTGGGGATATTGAACTTGAGCAGGAATGCTATTGAAGGTAACATACCGGATGCTTTCGGACCGAAATCTTACTTCATG GCTCTTGACTTGTCTTACAACAATCTGAAGGGTCCGATACCCGGTTCACTTTCGTCGGCAGCATATGTGGGGCATTTGGATTTAAGCCACAATCATCTTT GCGGAACAATTCCTGTTGGGACACCATTTGATCACCTTGAAGCATCCTCGTTTAGTTTTAATGATTGTCTTTGCGGGAATCCATTAAAGACTTGTTAA
AA sequence Show only first row Show all	>Potri.009G064300.1 pacid=42771601 polypeptide=Potri.009G064300.1.p locus=Potri.009G064300 ID=Potri.009G064300.1.v4.1 annot-version=v4.1 MSALLTTLALLFTLIYTVTSSCTPSDLAALLAFKSSLNEPYLGIFNTWSGTNCCSNWYGISCDPTTGRVADINLRGESEDPIFEKAGRSGYMTGSINPSL CKLDRLSTLILADWKGVSGEIPGCVASLSNLRILDLIGNQISGKIPANIGNLQRLTVLNLADNGLTGEIPASLTALANMKHLDLSSNKLTGQLPADFGNL KMLSRALLSKNQLSGAIPNSISGMYRLADLDLSVNKISGSVPGWLGSMRVLSTLNLDSNMISGQLPASLLSSTGLGILNLSRNAIEGNIPDAFGPKSYFM ALDLSYNNLKGPIPGSLSSAAYVGHLDLSHNHLCGTIPVGTPFDHLEASSFSFNDCLCGNPLKTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Potri.009G064300 [exp]	0	1	Pt-DRT100.1
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	2.82	0.9105
AT4G13710			Pectin lyase-like superfamily ...		Potri.001G052300 [exp]	2.82	0.8983
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Potri.014G111200 [exp]	6.63	0.8872
AT5G06940			Leucine-rich repeat receptor-l...		Potri.016G051600 [exp]	8.48	0.9034
AT1G69160			unknown protein		Potri.008G098200 [exp]	10.95	0.8948
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	12.96	0.9054
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.002G197200 [exp]	12.96	0.9017
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	13.19	0.9006
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	13.60	0.9016	ANN1.3
AT2G30890			Cytochrome b561/ferric reducta...		Potri.005G204300 [exp]	14.96	0.8949

Compare expression of checked genes

Potri.009G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.