Plant FIBer expression Database

Potri.009G064500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26880 334 / 3e-116 AGL26 AGAMOUS-like 26 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015701
[exp]
322 / 7e-111 AT5G26880 294 / 6e-100 AGAMOUS-like 26 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF00588 SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence
>Potri.009G064500.1 pacid=42770881 polypeptide=Potri.009G064500.1.p locus=Potri.009G064500 ID=Potri.009G064500.1.v4.1 annot-version=v4.1
ATGGACACAAGTAGGAGCTTAAAAACCTTAAACATCACAACCCCTTTACCTTTCAACTTCCGTTCAAGAGCCTCTCTTTTACGTCCTTTCTGCTTATCAC
AACTCAAGAAGCATTTCAACCCTTCTCTTCCACTGTCTCAATGCTACTCTCCTTTTTGCTCTCAATCTGGAAGAGGAAATGGGAATTCTTTGCCAGATGG
AGTGGGTAAGGGAGTTAACGAAGTCTCTCGCAATAAGAAGCTTCTTCAAGTGGTACTAGTTTCTCCTCAGATTCCTGGAAATACTGGTTGCATTGCAAGA
ACATGTGCGGCAACGTCTGTTGGCCTACACTTAGTTGGGCCCTTAGGATTCCAAGTTGATGATGCAAAACTAAAGCGTGCTGGACTAGATTACTGGCCAT
ATGTGGTTGTGAAAGTTCATGACTCCTGGGCAGAGTTTCAAGACTATTTCAGGCAGCAGGAAGGGGATAAACGTCTGCTGGCATTTACTAAAAGAGGAAC
AACAACTCATTCAGAATTCTCCTATAGGAAAGGTGATTATCTAGTATTTGGCTCAGAAACATCTGGCTTACCGCCTGAAGCCTTGCTGGACTGCAAAAGC
GAAATGTTTGGTGGTGGGATGATCAGGATACCTATGGTTGAAACATATGTTAGATGCCTAAATCTCTCTGTGAGTGTTGGCATCGCTTTGTATGAAGCTT
CTAGACAGTTGAACTATGAGCAGCTTCAATTCCCCTCAGAAGATTTTGTGAACGGCGGCGAACAGTCATTTATCACCGAGGATATTTTTGCTTGA
AA sequence
>Potri.009G064500.1 pacid=42770881 polypeptide=Potri.009G064500.1.p locus=Potri.009G064500 ID=Potri.009G064500.1.v4.1 annot-version=v4.1
MDTSRSLKTLNITTPLPFNFRSRASLLRPFCLSQLKKHFNPSLPLSQCYSPFCSQSGRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIAR
TCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKS
EMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSEDFVNGGEQSFITEDIFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26880 AGL26 AGAMOUS-like 26 (.1.2) Potri.009G064500
[exp]
0 1
AT5G59500 protein C-terminal S-isoprenyl... Potri.009G033700
[exp]
14.24 0.8937
AT5G17560 BolA-like family protein (.1) Potri.013G074100
[exp]
14.28 0.8910
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.008G017900
[exp]
15.19 0.8859
AT4G22930 PYR4, DHOASE DIHYDROOROTASE, pyrimidin 4 (.... Potri.007G139700
[exp]
16.30 0.8535
AT1G16080 unknown protein Potri.003G185754
[exp]
21.86 0.8921
AT2G30695 unknown protein Potri.013G125500
[exp]
37.88 0.8875
AT1G10522 unknown protein Potri.010G094900
[exp]
49.63 0.8840
AT4G34412 unknown protein Potri.004G141400
[exp]
50.19 0.8774
AT2G44640 unknown protein Potri.014G044200
[exp]
59.19 0.8704
AT5G51220 ubiquinol-cytochrome C chapero... Potri.003G151600
[exp]
60.79 0.8767

Potri.009G064500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.