Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52120 509 / 9e-180 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) AT5G26610 49 / 2e-06 D111/G-patch domain-containing protein (.1.2.3) AT3G52350 47 / 4e-06 D111/G-patch domain-containing protein (.1) AT5G23080 49 / 5e-06 TGH TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) AT5G08535 45 / 1e-05 D111/G-patch domain-containing protein (.1.2) AT4G16200 45 / 4e-05 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT1G63980 45 / 7e-05 D111/G-patch domain-containing protein (.1.2) AT3G54230 44 / 0.0002 SUA suppressor of abi3-5 (.1.2) AT1G30480 44 / 0.0002 DRT111 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G269900 [exp] 714 / 0 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.013G002100 [exp] 48 / 8e-06 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.005G002700 [exp] 47 / 2e-05 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.006G265700 [exp] 47 / 3e-05 AT5G25060 1182 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.003G132600 [exp] 46 / 4e-05 AT1G63980 328 / 9e-110 D111/G-patch domain-containing protein (.1.2) Potri.008G003100 [exp] 42 / 0.0001 AT5G08535 107 / 5e-31 D111/G-patch domain-containing protein (.1.2) Potri.018G017200 [exp] 44 / 0.0002 AT5G25060 1179 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Potri.011G098100 [exp] 43 / 0.0003 AT1G30480 348 / 1e-118 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1) Potri.001G372600 [exp] 43 / 0.0003 AT1G30480 327 / 5e-110 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111, D111/G-patch domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015703 [exp] 536 / 0 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10037485 [exp] 517 / 0 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10039947 [exp] 48 / 1e-05 AT4G34140 350 / 4e-116 D111/G-patch domain-containing protein (.1.2.3) Lus10015391 [exp] 45 / 1e-05 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10031446 [exp] 47 / 2e-05 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 47 / 2e-05 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10025704 [exp] 46 / 3e-05 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10026892 [exp] 47 / 4e-05 AT5G25060 1271 / 0.0 RNA recognition motif (RRM)-containing protein (.1) Lus10035958 [exp] 46 / 5e-05 AT1G14650 886 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10024674 [exp] 45 / 8e-05 AT1G63980 352 / 3e-119 D111/G-patch domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain CL0449 [poplar] [flax] PF01805 [poplar] [flax] Surp Surp module
Representative CDS sequence Show only first row Show all	>Potri.009G064600.3 pacid=42770844 polypeptide=Potri.009G064600.3.p locus=Potri.009G064600 ID=Potri.009G064600.3.v4.1 annot-version=v4.1 ATGGACAAAGGAGCACCATCTAGTCTGTTTGTTAATGATGGTTCATTTATGGAGAAGTTTAAACAACTTCAGCAAGGGAATGGGAAGGAACAGGAAAAGG ATAAGGGTGCTGCAGAAAAGGATTCTAAACCCAAAACAATTGTTTCAGGGACTGTGACGCCTAAACCTTCTTTTGGTAAAGTAACTATGCAGTTTAAGAC TAATGATGCATCGAAGACATCCCAGACTGCTTCCAGTGGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGCTTGTGGCACCTGCAGTTAAGTTGGGT GAAGATGACGAGGATGAAGATGAAGCAGATGCTGTAAATACTTCAGGTGGTGTGTCTGCAAAGAGGCAGAAGTTGGGTCAACTGGATGCATCTGAACAAT CATTGAAACGATTGGATGTTGCACCACCTCCCCCAAGTGATCCCACAGTGAAGAATGTTGCAGACAAACTAGCAAGTTTCGTTGCTAAACATGGAAGGCA ATTTGAGAATGTTACACGCCAAAAGAATCCTGGAGATACACCTTTCAAATTTTTATTTGATGAGAATTGCGCAGACTTCAAGTATTATCAGTATAGGCTT GCCGAAGAAGAAAAGGCTCTTTCACAGAACAGGGATTCTCATATCTCTTCTAGTGGTGGTACAAGTACTTCGGCATCTAAATCCACGGGTAGCTCTCGAA GGTCACAGCAGCAGCAATCAAATTACCAAATTCCCGCTTCAGCTTTATACGAAGCTGCTGAAGAGCCCAAGGGTTCATTGTCAACATCTTCAGGAAGAGC TGGTGAATCTAGTGCACCAGCAGGTACAGATCCTATAGAAATGATGGAGTTCTACATGAAGAAAGCTGCTCAGGAAGAGAGGAGGAGACAGCCTAAACTG TCTAAGGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTCTTCCTTAAAAGGTCATCACATGGGTGATTACATCCCACCAGAAGAGCTTGAGAAATTCT TGGCTACTTGTAATGATGTAGCTGCAACAAAAGCTGCTAAAGAGGCTGCAGAAAGGGCTAGAATCCAGGCGGATAATGTTGGCCATAAACTCTTGTCCAA AATGGGTTGGAAAGAAGGTGAGGGTCTGGGGAGCTCCAGAAGTGGTATTTCAAATCCGATCATGGCTGGCAATGTAAAGAAGGATCACTTGGGTGTTGGT GCTCACAACCCTGGGGAGGTGTCTCCTGATGATGATATATACGAGCAGTATAAGAAGCGAATGATGCTTGGTTACCGTCACAGGCCAAACCCTCTGAACA ACCCTCGAAAAGCGTACTACTGA
AA sequence Show only first row Show all	>Potri.009G064600.3 pacid=42770844 polypeptide=Potri.009G064600.3.p locus=Potri.009G064600 ID=Potri.009G064600.3.v4.1 annot-version=v4.1 MDKGAPSSLFVNDGSFMEKFKQLQQGNGKEQEKDKGAAEKDSKPKTIVSGTVTPKPSFGKVTMQFKTNDASKTSQTASSGKLAFSLKQKSKLVAPAVKLG EDDEDEDEADAVNTSGGVSAKRQKLGQLDASEQSLKRLDVAPPPPSDPTVKNVADKLASFVAKHGRQFENVTRQKNPGDTPFKFLFDENCADFKYYQYRL AEEEKALSQNRDSHISSSGGTSTSASKSTGSSRRSQQQQSNYQIPASALYEAAEEPKGSLSTSSGRAGESSAPAGTDPIEMMEFYMKKAAQEERRRQPKL SKDEMPPPASLQASSLKGHHMGDYIPPEELEKFLATCNDVAATKAAKEAAERARIQADNVGHKLLSKMGWKEGEGLGSSRSGISNPIMAGNVKKDHLGVG AHNPGEVSPDDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	0	1
AT3G28430			unknown protein		Potri.006G204600 [exp]	1.41	0.9248
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.008G035600 [exp]	2.23	0.9089	Pt-VPS33.2
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	3.46	0.9039	Pt-KUP10.1
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Potri.010G049100 [exp]	5.65	0.9018
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	5.83	0.9208
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	9.32	0.8857
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	9.48	0.8938
AT3G53540			unknown protein		Potri.016G080200 [exp]	9.74	0.8925
AT1G71820		SEC6	SEC6 (.1.2)		Potri.019G088100 [exp]	10.19	0.8735
AT1G25145		AtLpxC4	lipid X C4, UDP-3-O-acyl N-ace...		Potri.010G106400 [exp]	10.95	0.8899

Compare expression of checked genes

Potri.009G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.