Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50520 284 / 6e-91 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT5G47990 278 / 5e-89 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT4G15350 277 / 2e-88 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT3G20140 275 / 9e-88 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT2G05180 268 / 5e-86 CYP705A6 "cytochrome P450, family 705, subfamily A, polypeptide 6", cytochrome P450, family 705, subfamily A, polypeptide 6 (.1) AT3G32047 268 / 5e-85 Cytochrome P450 superfamily protein (.1) AT3G20130 267 / 1e-84 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2) AT3G20100 267 / 1e-84 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT3G20110 265 / 9e-84 CYP705A20 "cytochrome P450, family 705, subfamily A, polypeptide 20", cytochrome P450, family 705, subfamily A, polypeptide 20 (.1) AT2G14100 265 / 1e-83 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065000 [exp] 382 / 1e-129 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.001G270900 [exp] 381 / 7e-129 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G066200 [exp] 378 / 6e-128 AT4G15350 410 / 7e-139 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) Potri.009G066300 [exp] 374 / 5e-126 AT3G20140 419 / 2e-142 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) Potri.006G057900 [exp] 284 / 3e-91 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G049800 [exp] 266 / 2e-84 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.016G052600 [exp] 265 / 1e-83 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G190800 [exp] 253 / 4e-79 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G058200 [exp] 247 / 6e-77 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023827 [exp] 245 / 4e-76 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10035502 [exp] 236 / 1e-72 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10005878 [exp] 236 / 2e-72 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 229 / 8e-70 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10008112 [exp] 178 / 2e-50 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 177 / 4e-50 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10019459 [exp] 175 / 1e-49 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) Lus10012879 [exp] 174 / 4e-49 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10031674 [exp] 168 / 7e-47 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10041951 [exp] 164 / 1e-45 AT3G48280 519 / 0.0 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G065100.2 pacid=42771338 polypeptide=Potri.009G065100.2.p locus=Potri.009G065100 ID=Potri.009G065100.2.v4.1 annot-version=v4.1 ATGGCTGCCATGACTGATGTCGAATACTACTTCATTACCTTCCTCCTTGTGCTCACCTCAACCTTTATTCTCCAATACATCTTAAGGAGACTAACAAAGC ACAGTACCCATCTTTGCCTCCCTCCAATCCAGCAGCATATAAATGCTTGCACATTGCACAACCTCTGCTCCAAATATGGTCCTCTTCTCTATCTTCGTCT TGGCTCCTTCCCTGTCCTTCTTGTCTCATCCGCTTCAATGGCCAACGAAATCTTCAAGACACACGATCTCAATTTTGCATACAAACCAAAATCTCCTTTC GAGGATAGTATACTATTTGGAACCTCAAGTTTTCGTCATGCCCCGTATGGAGATTACTGGAGATTCATGAAGAAACTTTGTCTAACAGAATTGCTTGGAG CGCGACAGCTAGAAAGGTCGCGGGGCGTTAGAAGAGAAGAACTTGTTCGCTTTTTGAGAAAAGCGTTCGAGAAAGCTAAAAAAAAGGAGGTCGTAGATTT GAGCAAAGAGATAATGACACTAACAAACAATATTACGTACAGGATGGTGATGAGTGCGAGGTGTTCAGGACAAGATAATGATGTTGAAAAGTGTGTGGGG CTGGTGCGAGAATCCTTTCAGCTAGTAGCTAAGATGACTTTAGCAAATCTTTTAGGCCCTTTAAGAAAAGTAGGTGTTTTCTTTTTCGGGGAGCAGCTCT TGGATGTACCAAGAAGGTTTGATGAGTTGTTGGAGAGGATCATGGAAGAGCATGAAGAGAGGGCAAGAAGAGATGGCGGTGAGATAGAAAATAAAGATTT GATGGATATTGTCTTGGAAGCACATCACGACAAAGATGCAGAGGTTAAGATAAGCAGGACTCAAATGAAATCTTTCTTTCTGGATCTCTTCTTTGGAGGC ACTAGTACCACAGCACATTCGATGCAATGGTTAATGGCAGAGATGATCAATCATCCTCAAGTGTTCAAGAAGCTTAGAGAGGAGATAGACTCTCTTGTTG GAAGAAATAGACTAGTGGAAGATTCAGACATCCCAAGTCTCCATTATTTGCAAGCTGTTGTGAAAGAAACACTTAGACTACACCCACCTGTTAAGAGATT GCCATTATTGTGGCAAATGTCCCACCCACCACTATGCTTAGTGGAATTCTTAGTGGTAGCTTCATTCATGCCACAATTGGTGGCATACTTTAAGGCTTGC TTGTCCCACCAAAGTTGA
AA sequence Show only first row Show all	>Potri.009G065100.2 pacid=42771338 polypeptide=Potri.009G065100.2.p locus=Potri.009G065100 ID=Potri.009G065100.2.v4.1 annot-version=v4.1 MAAMTDVEYYFITFLLVLTSTFILQYILRRLTKHSTHLCLPPIQQHINACTLHNLCSKYGPLLYLRLGSFPVLLVSSASMANEIFKTHDLNFAYKPKSPF EDSILFGTSSFRHAPYGDYWRFMKKLCLTELLGARQLERSRGVRREELVRFLRKAFEKAKKKEVVDLSKEIMTLTNNITYRMVMSARCSGQDNDVEKCVG LVRESFQLVAKMTLANLLGPLRKVGVFFFGEQLLDVPRRFDELLERIMEEHEERARRDGGEIENKDLMDIVLEAHHDKDAEVKISRTQMKSFFLDLFFGG TSTTAHSMQWLMAEMINHPQVFKKLREEIDSLVGRNRLVEDSDIPSLHYLQAVVKETLRLHPPVKRLPLLWQMSHPPLCLVEFLVVASFMPQLVAYFKAC LSHQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50520		CYP705A27	"cytochrome P450, family 705, ...		Potri.009G065100 [exp]	0	1
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.017G002600 [exp]	1.41	0.9631
AT1G62770			Plant invertase/pectin methyle...		Potri.001G119200 [exp]	3.31	0.9590
AT5G45540			Protein of unknown function (D...		Potri.007G025500 [exp]	4.58	0.9539
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	7.28	0.9698
AT3G11310			unknown protein		Potri.002G200700 [exp]	9.11	0.9337
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	14.86	0.9555
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G138201 [exp]	17.20	0.9604
AT2G28490			RmlC-like cupins superfamily p...		Potri.009G054700 [exp]	18.30	0.9367
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	19.44	0.9563
					Potri.004G184650 [exp]	19.59	0.9596

Compare expression of checked genes

Potri.009G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.