Plant FIBer expression Database

Potri.009G065201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G065201.1 pacid=42771449 polypeptide=Potri.009G065201.1.p locus=Potri.009G065201 ID=Potri.009G065201.1.v4.1 annot-version=v4.1
ATGAAGCTCAATAAAGTGACCAAGATACTCATAGTTGTCACGATCATTACCCTACTGGTAACATCAATAGCAGCCGCAGGTGGAGGCGGAGGCGGTGGTG
GAAGAGGAGGCGGAGGTGGTGGAGGTGGAGGTAGAGGTGGTGGTGGAGGTAAAGGTGGTGGTCCTGCAAGAGGTGGGGGTACCCCAGCAAAAGGAAGTAG
CCCTGGGACACGCAACGTTGGAGGCGGCGGTACCAGTACCGTTCCTGGTGGAGCTGCAGGTGGTGGTGGGCCAGTACTGGGGGGTTCTGGTCATGCTGGA
GGGAATTCAGGTTCTGTGTCTGTTGCAAGGGATCCTGCTTCCATGTTGCTGCATGTTCTTGTAATGTTTTGCATTTTCTTTGTGTTAATAATGTATTAG
AA sequence
>Potri.009G065201.1 pacid=42771449 polypeptide=Potri.009G065201.1.p locus=Potri.009G065201 ID=Potri.009G065201.1.v4.1 annot-version=v4.1
MKLNKVTKILIVVTIITLLVTSIAAAGGGGGGGGRGGGGGGGGGRGGGGGKGGGPARGGGTPAKGSSPGTRNVGGGGTSTVPGGAAGGGGPVLGGSGHAG
GNSGSVSVARDPASMLLHVLVMFCIFFVLIMY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G065201
[exp]
0 1
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Potri.004G095000
[exp]
2.82 0.7984
AT1G19880 Regulator of chromosome conden... Potri.002G025600
[exp]
6.92 0.7788
AT1G80410 OMA, EMB2753 OMISHA, EMBRYO DEFECTIVE 2753,... Potri.001G177700
[exp]
7.74 0.8366
AT2G46580 Pyridoxamine 5'-phosphate oxid... Potri.014G100700
[exp]
37.41 0.7090
AT3G57320 unknown protein Potri.006G046800
[exp]
39.34 0.7215
AT4G17050 UGLYAH ureidoglycine aminohydrolase (... Potri.001G150800
[exp]
45.95 0.7536
AT1G73320 S-adenosyl-L-methionine-depend... Potri.017G153900
[exp]
51.64 0.7455
AT1G79750 ATNADP-ME4 Arabidopsis thaliana NADP-mali... Potri.018G086700
[exp]
51.76 0.6979
AT5G24670 TAD3, EMB2820 tRNA adenosine deaminase 3, EM... Potri.013G094800
[exp]
61.71 0.7594
AT3G59890 Dihydrodipicolinate reductase,... Potri.017G001900
[exp]
68.17 0.6926

Potri.009G065201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.