Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52140 1758 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) AT4G28080 310 / 9e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15290 306 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G01320 306 / 2e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271200 [exp] 2319 / 0 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.003G031000 [exp] 316 / 9e-88 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G180100 [exp] 315 / 2e-87 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G102500 [exp] 313 / 1e-86 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G098600 [exp] 299 / 4e-82 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G170900 [exp] 298 / 4e-82 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037481 [exp] 1931 / 0 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 1922 / 0 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10036604 [exp] 315 / 3e-87 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030259 [exp] 308 / 2e-85 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004009 [exp] 307 / 8e-85 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 303 / 1e-83 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05303 [poplar] [flax] DUF727 Protein of unknown function (DUF727) PF12807 [poplar] [flax] eIF3_p135 Translation initiation factor eIF3 subunit 135 PF13236 [poplar] [flax] CLU Clustered mitochondria CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat CL0020 [poplar] [flax] PF15044 [poplar] [flax] CLU_N Mitochondrial function, CLU-N-term
Representative CDS sequence Show only first row Show all	>Potri.009G065300.4 pacid=42771790 polypeptide=Potri.009G065300.4.p locus=Potri.009G065300 ID=Potri.009G065300.4.v4.1 annot-version=v4.1 ATGGCTGGGAAATCTAATAAAGGGAGGAACCGGAGAGGATCCAATAGCACAACAAATTCTTCAGAGCCAACAGCGTCATCTGATGCTCCTGTGAAAGATG ACATAACCGCTTCTGAAGCTGCTTCAGAAGTTGGTGTAGCTATTGTTAATGGAGCACCAGCTGGGGGTGAACCTGCTAATGGCACCTCAGAGATAAAGGA GTCTGAAACAGCAAATTCTACGAGTGAAGCAAAGCAAGGTGATCTTCATCTTTACCCCGTCTCTGTCAAAACACAAAGTAGCGAGAAGCTTGAGTTACAA TTGAACCCAGGAGATTCCGTCATGGATGTAAGACAATTCCTTCTCGATGCTCCCGAAACATGTTTCTTTACATGCTATGACTTGTTGCTGCACACAAAGG ATGGTTCAACTCTTCAAATAGAAGATTATAATGAAATATCTGAAGTAGCTGACATTACTTCTGGTGGTTGCTCCTTGGAGATGGTTGCTGCACCTTATGA TGATAGATCGATCAGGGCTCATGTTCACCGCACAAGAGAATTGCTTTCACTTTCTACACTTCATGCTTCATTATCAACGTCCCTTGCTTTAGAGTACGAA AAAGCACAAAACAAAGCTCTTGGTTCAGATACTGGAAAAACTGAGGTCCCTGAGCTTGATGGTATGGGATTTATGGAGGATGTTGCAGGTTCGGTTGGTA AATTGTTGTCATTCCCAGCAAAGGAGATCATGTGTGTGGACAGTATTATATTTTCATCCTTCAATCCTCCCCCAAGCCATAGAAGGCTCGTTGGGGATTT GATTTATTTGGATGTAATAACATTGGAGGGTAACAAATATTGTATTACTGGAACCACAAAGATGTTCTATGTCAATTCAAGCACAGGGAATGTCCTTGAC CCAAGGCCAAGTAAAGCTACCTCTGAAGCAACTACCCTTGTTGGACTCCTGCAGAGAATCAGTCCCAAGTTCAAAAAAGCTCTTCGTGAAATTTTGGAGC ATAAGGGCTCTGCACACCCTTTTGAAAATGTTCAATCTCTCCTGCCACCTTGTTCATGGCTAGGATTATACCCAGTTCCTGACCACAGACGTGATGCGGC CAGAGCAGAGGATGCACTGACTCTTTCATATGGTAGTGAGCTGATTGGCATGCAAAGAGATTGGAATGAGGAGTTGCAATCCTGTCGGGAGTTTCCCCAT TCAGCTCCTCAGGAAAGGATTTTGCGTGATAGGGCTCTCTACAAAGTAACTTCGGACTTTGTTGATGCAGCAGTTAAAGGTGCTATTGGAGTCATCAACA GATGTATTCCCCCCATAAATCCAACTGATCCAGAGTGCTTTCATATGTATGTTCACAACAATATATTCTTCAGTTTTGCTGTGGACGTGGACCTTGAACA GCTCTCCAAGAAATGTAATTCAGATACTAGTTCAAAGACAGAGAACACCAGTTCTTCAATTAATTCATCTGAAAAGGTCACCAGCGATTTGCATGGGGAT GGTGGAATTGCCAATGGGGTGAAATCTGATGGATCAACCGTTGAAGTGGTGGAATTGCATCCCGAGTCATCTTCTGAGCCGCAGTTGGCCGAGAGTGAAC AAGCTACATATGCGTCGGCAAATAATGATCTGAAAGGCACCAAAGCCTACCAGGAAGCTGATGTCCCTGGTTTATATAATCTTGCCATGGCCATAATTGA TTACAGGGGTCACAGAGTGGTAGCCCAGAGTGTCTTACCTGGCATTCTTCAAGGGGATAAATCAGACTCTCTTCTATATGGTTCTGTTGATAATGGAAAG AAAATATGCTGGAATGAAGATTTTCATTCTAAGGTAGTGGAAGCTGCTAAACGCCTTCATCTCAAGGAACACACTGTCCTAGATGGATCCGGGGATGCTT TCAAATTAGCTGCTCCAGTAGAATGCAAGGGCATTGTAGGTAGTGATGACAGGCATTATCTACTAGACTTGATGAGAGCAACTCCTCGTGATGCAAACTA TACTGGACCTGGCTCGCGGTTTTGCATATTGAGACCAGAATTAATTTCTGCCTTCTGTCAGGCTGAAGCTGTGGCAAGATTGAAGAGTAGACCAAAATCC GAGGGAGGGGCTCACGTGGCTGCAGATTCTACAGAAGTTACTACTGGTGATGAGCAAGTTAAACCTGAGGAAGCTGCAGCTTCCATCAACAATCAAGAGA TTGCTAAAGAAGGGAAAGCTGACACTGTAGAAGAAAGTGCTCCTGCTCTTGCTGGAAGCTCTGAATCTTGTGAAGAAATACTTTTTAACCCTAATGTTTT TACCGAGTTCAAGTTGTCTGGTGATCCGGAGGAGATTGCAGCAGATGAAGAAAATGTGAAGAAAGTGGGTTCATATCTTGCAAATACTGTGCTTCCAAAG TTCATCCAAGATCTTTGCACACTTGAAGTCTCGCCCATGGATGGACAGACTCTTACCGAAGCACTACATGCTCATGGAATTAATGTTCGCTACATGGGAA AGGTAGCTGAAGGGATAAAACACTTACCTCATCTATGGGATCTTTGTTCCAATGAGATTGTTGTCCGGTCTGCAAAGCACATCCTCAAGGATCTTCTCAG GGATACAGATGATAATGATCTAGGGCCAGCAATTTCTCATTTTTTCAACTGTTTCTTTGGAACTTGTCAAGCTGTTGGCATAAAAGTTTCAGCTAATGGT CCGCATTCAAGAGCAGCAAAGAAAGAACAATCTGGCAATCAGTCTTCAGGAAAATCCTCTAGGGGACAAACAAGGTGGAAAGGAGCATCTGCAAGAAAGA ACCAATCCTCATATATGAATGTTAGCTCAGAAACTCTATGGTCTGACATTCAGGAACTTGCAGAGCTCAAATATCAGTTTGAGTTACCAGAGGATGCGAG GTCACAAGTGAAGAAAGTCTCGGTTATTCGGAATCTGTGCCAAAAGATGGGCATTACCATCGCAGCTCGCAAATATGATCTCAATGCTGCAATGCCATTC CAACTGTCAGATATCTTGAATCTCCAACCCGTGGTAAAGCATTCGGTTCCTCTATGTTCAGAAGCTAAGGATATTGTGGAAACCGGAAAGGTTCAACTAG CTGAGGGGATGCTTAGTGAAGCCTACACGTCATTTTCCGATGCATTTTCCATTCTTCAACAGGTGACTGGTCCAATGCATCGGGAGGTTGCCAACTGTTG TCGGTACCTGGCCATGGTTTTGTATCATGCTGGTGATATGGCTGGAGCAATCATCCAACAGCACAAGGAGTTGATCATAAATGAACGTTGCCTGGGATTA GACCACCCCGACACTGCCCACAGTTATGGAAACATGGCTCTCTTTTACCATGGACTAAACCAAACAGAACTTGCATTGCGACATATGTCCCGTGCGCTGC TCTTACTGAGTTTGTCTTCTGGGCCAGACCACCCTGATGTGGCTGCAACCTTCATTAATGTTGCAATGATGTACCAGGACATTGGAAAGATGAATACAGC TCTTCGCTATCTGCAAGAGGCCTTGAAAAAGAACGAGAGGCTTTTAGGAGAGGAACATATTCAAACTGCTGTATGCTACCATGCTCTTGCAATTGCATTT AACTGTATGGGCGCGTTCAAGCTATCACACCAGCATGAGAAGAAAACCTATGACATACTTGTCAAACAGCTTGGTGAGGAGGACTCAAGGACTCGAGACT CCCAAAACTGGATGAAGACATTTAAGATGCGAGAACTGCAGAAGCAGAAAGGTCAGGCATTGAATGCAGCTTCTGCTCAAAAGGCGATCGATATATTGAA GGCTAATCCTGACCTGTTGCATGCATTCCAAGCTGCTGCGGTTGCTGGAGGATCTGGATCTGGGAGTACCAGTGGTTCCATGAACAAATCCCTTAATGCA GCTATTGTTGGTGAGACACTTCCACGGGGAAGGGGAGTAGATGAACGAGCTGCTCGTGCAGCAGCAGAAGTTAGGAAGAAAGCAGCTGCTAGGGGGCTCT TGACTCGTCCACATGGTGTTCCTGTTCAAGCTTTGCCACCTCTCACTCAGCTCCTCAACATCATTAATTCAGGGGCAACTCCAGATACAGTCAACAACGA GGAAGCAGCAGGTGGAGTGGAGGAAACTAATGGACAATCTTCTAATGACCCAGTAGATACTCAAAAAGACCAAACATCAGGAGGGCAAGATCAGGCTCCT GTTGGATTGGGCAAAGGCTTAGCATCATTAGATGCCAAGAAACAGAAAGCCAAAGCCAAAGTTGCAGCTTAA
AA sequence Show only first row Show all	>Potri.009G065300.4 pacid=42771790 polypeptide=Potri.009G065300.4.p locus=Potri.009G065300 ID=Potri.009G065300.4.v4.1 annot-version=v4.1 MAGKSNKGRNRRGSNSTTNSSEPTASSDAPVKDDITASEAASEVGVAIVNGAPAGGEPANGTSEIKESETANSTSEAKQGDLHLYPVSVKTQSSEKLELQ LNPGDSVMDVRQFLLDAPETCFFTCYDLLLHTKDGSTLQIEDYNEISEVADITSGGCSLEMVAAPYDDRSIRAHVHRTRELLSLSTLHASLSTSLALEYE KAQNKALGSDTGKTEVPELDGMGFMEDVAGSVGKLLSFPAKEIMCVDSIIFSSFNPPPSHRRLVGDLIYLDVITLEGNKYCITGTTKMFYVNSSTGNVLD PRPSKATSEATTLVGLLQRISPKFKKALREILEHKGSAHPFENVQSLLPPCSWLGLYPVPDHRRDAARAEDALTLSYGSELIGMQRDWNEELQSCREFPH SAPQERILRDRALYKVTSDFVDAAVKGAIGVINRCIPPINPTDPECFHMYVHNNIFFSFAVDVDLEQLSKKCNSDTSSKTENTSSSINSSEKVTSDLHGD GGIANGVKSDGSTVEVVELHPESSSEPQLAESEQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGK KICWNEDFHSKVVEAAKRLHLKEHTVLDGSGDAFKLAAPVECKGIVGSDDRHYLLDLMRATPRDANYTGPGSRFCILRPELISAFCQAEAVARLKSRPKS EGGAHVAADSTEVTTGDEQVKPEEAAASINNQEIAKEGKADTVEESAPALAGSSESCEEILFNPNVFTEFKLSGDPEEIAADEENVKKVGSYLANTVLPK FIQDLCTLEVSPMDGQTLTEALHAHGINVRYMGKVAEGIKHLPHLWDLCSNEIVVRSAKHILKDLLRDTDDNDLGPAISHFFNCFFGTCQAVGIKVSANG PHSRAAKKEQSGNQSSGKSSRGQTRWKGASARKNQSSYMNVSSETLWSDIQELAELKYQFELPEDARSQVKKVSVIRNLCQKMGITIAARKYDLNAAMPF QLSDILNLQPVVKHSVPLCSEAKDIVETGKVQLAEGMLSEAYTSFSDAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIIQQHKELIINERCLGL DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF NCMGAFKLSHQHEKKTYDILVKQLGEEDSRTRDSQNWMKTFKMRELQKQKGQALNAASAQKAIDILKANPDLLHAFQAAAVAGGSGSGSTSGSMNKSLNA AIVGETLPRGRGVDERAARAAAEVRKKAAARGLLTRPHGVPVQALPPLTQLLNIINSGATPDTVNNEEAAGGVEETNGQSSNDPVDTQKDQTSGGQDQAP VGLGKGLASLDAKKQKAKAKVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	1.00	0.8979
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	3.74	0.8526
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.007G096100 [exp]	4.00	0.8237
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	4.00	0.8485
AT5G23690			Polynucleotide adenylyltransfe...		Potri.015G104300 [exp]	6.08	0.7752
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	6.70	0.8522
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	6.92	0.8186	HF.1
AT2G40360			Transducin/WD40 repeat-like su...		Potri.004G222500 [exp]	7.34	0.8293
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	7.34	0.8083
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.017G120100 [exp]	8.94	0.8213

Compare expression of checked genes

Potri.009G065300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.