Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GFA2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48030 504 / 2e-177 GFA2 gametophytic factor 2 (.1) AT1G28210 273 / 2e-87 ATJ1 DNAJ heat shock family protein (.1.2) AT2G22360 225 / 1e-68 DNAJ heat shock family protein (.1) AT4G39960 210 / 6e-63 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 201 / 5e-59 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 192 / 2e-55 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G22060 125 / 1e-31 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 121 / 1e-30 ATERDJ3B DNAJ heat shock family protein (.1) AT3G44110 113 / 3e-27 ATJ3 DNAJ homologue 3 (.1.2) AT5G25530 99 / 1e-22 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271300 [exp] 758 / 0 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G160200 [exp] 258 / 4e-81 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.005G073900 [exp] 223 / 5e-68 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 223 / 6e-68 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 199 / 3e-58 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 168 / 2e-46 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.009G015700 [exp] 128 / 1e-32 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 126 / 5e-32 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 124 / 3e-31 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027634 [exp] 591 / 0 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10035855 [exp] 586 / 0 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 578 / 0 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10011934 [exp] 577 / 0 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10020949 [exp] 233 / 8e-73 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10023148 [exp] 221 / 7e-67 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 220 / 1e-66 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 202 / 2e-59 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 202 / 3e-59 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 195 / 3e-57 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G065500.4 pacid=42771918 polypeptide=Potri.009G065500.4.p locus=Potri.009G065500 ID=Potri.009G065500.4.v4.1 annot-version=v4.1 ATGGTTCGGTCTCGTGGCGTCAAGCTTGTTGGTTGGCTCGCTCGCCGTTCTCTCCCCTTCAACCTCCTCGAAGATTCTGCTGATTCCGTATACAAGAGTG TACTAAGTGGGAGTTTTAGGAGATTGAGCGGTGCTGCTGGGGTTTATAATCCTGTTAGGTCTTTTGGCAATCACACTCATAAAAATGTTAACCAAAAAAA TTGGTTGCTATTGGGAGCTTTAAATGCAAATTTTGGTGCTGCGAGGTCAATTCATGGCTCTGCTCATATGTCCAAAGATTATTATGATGTACTTGGCATT AGCAAGAATGCTAGTGCATCTGATATAAAGAAAGCTTATTATGGGCTGGCAAAGAAGCTCCATCCTGATACAAACAAAGATGATCCTGAAGCTGAAAAGA AGTTTCAAGAAGTTTCAAAGGCCTATGAGGTTTTGAAAGATGATCAAAAGCGGGAACAATATGATCAGCTAGGCCATGACGCATTTGAAAACCAAGATAA TTATCAGCCCGGTGGACCAGGATTTGAGAGTCCATTTGGTGACTTCTTCAGAATGGAAGATATATTCAGCAATATATTTAGACAGAATGTTGCTGGCCAA GATGTCAAGGTTTCCATTGAACTTTCCTTCATGGAAGCTGTTCAGGGATGCACCAAAACTATTACATTTCAGACTGATGTGGCTTGTGAAGCTTGTGGTG GAGAAGGTGTTCCTCCAGGAGTAAAACCTCAAATGTGTAAACGCTGTAAAGGCAGAGGCGTGATATCTACGCAAAAGGGTTTTTTCAGTTTTCAGCAGAC ATGTGATCAGTGTGGCGGAACTGGGCAAACTGTTTCGAGTTTTTGCAGGTCTTGCCATGGACGCAAAGTAGTGAGAGGATCAAAGACAATTTCATTGAAC ATTCCAACAGGAGTGGATGACAATGAGACTATGAAGCTCCCTAGAAGTGGCGGAGCAGACCCAGAGAAAAATCAACCTGGGGATCTCTATGTTACAATCA AGGTCCGGGAAGACCCTGTTTTCCGAAGAGAAGGCTCTAACATTCATGTTGATGCTGTTCTAGGCATTACCCAGGCAATTTTGGGGGGAACCATCCAAGT TCCAACTCTCACAGGAGATGTTGTACTCAAGGTCCGCCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAGAATAAAGGGATTAAAGCACGGGCCTCT TACTCATTTGGTGATCAGTTTGTGCACTTCAATGTCAAAATTCCAACGACTTTGACCCCAAGACAGCGTGAATTGATTGAGGAGTTTGCCAAAGAAGAAC AAGGTGAATGTGACAAACGTGCTGCTGGAGCATCTGGGTGA
AA sequence Show only first row Show all	>Potri.009G065500.4 pacid=42771918 polypeptide=Potri.009G065500.4.p locus=Potri.009G065500 ID=Potri.009G065500.4.v4.1 annot-version=v4.1 MVRSRGVKLVGWLARRSLPFNLLEDSADSVYKSVLSGSFRRLSGAAGVYNPVRSFGNHTHKNVNQKNWLLLGALNANFGAARSIHGSAHMSKDYYDVLGI SKNASASDIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSKAYEVLKDDQKREQYDQLGHDAFENQDNYQPGGPGFESPFGDFFRMEDIFSNIFRQNVAGQ DVKVSIELSFMEAVQGCTKTITFQTDVACEACGGEGVPPGVKPQMCKRCKGRGVISTQKGFFSFQQTCDQCGGTGQTVSSFCRSCHGRKVVRGSKTISLN IPTGVDDNETMKLPRSGGADPEKNQPGDLYVTIKVREDPVFRREGSNIHVDAVLGITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKARAS YSFGDQFVHFNVKIPTTLTPRQRELIEEFAKEEQGECDKRAAGASG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48030		GFA2	gametophytic factor 2 (.1)		Potri.009G065500 [exp]	0	1	GFA2.1
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Potri.002G175000 [exp]	4.12	0.8137	Pt-RSP31.2
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	4.47	0.8256	ARP6.1,ARP906
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	4.58	0.8331	CDC2.6
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Potri.001G376600 [exp]	5.91	0.8348
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	8.94	0.8273
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.001G072800 [exp]	13.15	0.8468	Pt-TOC75.2
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	15.16	0.8461
AT5G53920			ribosomal protein L11 methyltr...		Potri.011G116100 [exp]	26.15	0.7924
AT3G15350			Core-2/I-branching beta-1,6-N-...		Potri.001G399500 [exp]	28.14	0.7950
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	32.37	0.7599

Compare expression of checked genes

Potri.009G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.