Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74050 304 / 2e-105 Ribosomal protein L6 family protein (.1) AT1G74060 302 / 1e-104 Ribosomal protein L6 family protein (.1) AT1G18540 288 / 2e-99 Ribosomal protein L6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271500 [exp] 346 / 4e-122 AT1G74050 288 / 5e-99 Ribosomal protein L6 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039083 [exp] 318 / 4e-111 AT1G74050 363 / 1e-128 Ribosomal protein L6 family protein (.1) Lus10038775 [exp] 318 / 7e-111 AT1G74050 359 / 2e-127 Ribosomal protein L6 family protein (.1) Lus10039084 [exp] 316 / 4e-110 AT1G74050 356 / 3e-126 Ribosomal protein L6 family protein (.1) Lus10038776 [exp] 315 / 6e-110 AT1G74050 355 / 2e-125 Ribosomal protein L6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01159 [poplar] [flax] Ribosomal_L6e Ribosomal protein L6e PF03868 [poplar] [flax] Ribosomal_L6e_N Ribosomal protein L6, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G065800.1 pacid=42771673 polypeptide=Potri.009G065800.1.p locus=Potri.009G065800 ID=Potri.009G065800.1.v4.1 annot-version=v4.1 ATGGCTCCCAGGAAGACACCACAGGTATCCAGAAACCCAGATCTGGTTCGAGGGATCGGTAAGTACTCGAGGTCACAGATGTACCACAAGAGAGGGCTGT GGGCTATCAAGGCCAAAAACGGCGGTGTTTTCCCTAAACACGCTCCTAAAGTTAAAGACGCTGCCCCTGCTGAGAAACCACCTAAGTTTTACCCGGCTGA TGATGTCAAGAAGCCACTGCCTAACAGGCGCAAGCCTAAGCCCACCAAGCTCAGGGATAGTATTACTCCAGGGACTGTTTTGATCATTCTTGTTGGGAGG TTCAAGGGCAAGAGAGTTGTGTTCCTCAAGCAGCTTCCTTCAGGATTGCTTCTAGTCACTGGACCATTTAAGATCAATGGTGTTCCTCTTAGGAGAGTCA ACCAATCTTATGTGATTGGAACTTCCACTAAGGTTGACATCTCTGGTGTTAATGTGGAGAAGTTTGATGATAAATATTTTGGCAAGAAGGCTGAGAAGAA GAAGAAAAAGGGAGAGGGCAACTTCTTTGAGGCAGATAAAGAGGGTGAGAATGCTCTCCCACAAGAGAAGAAGGATGACCAGAAGGCAGTGGATGCACCG CTCATTAAATCACTCGAGTGTGTTCCAGATTTGAAGGCATACTTGGGTGCAAGGTTTTCTCTCAAGGATGGAATGAAACCTCACGAGCTTGTGTTCTAA
AA sequence Show only first row Show all	>Potri.009G065800.1 pacid=42771673 polypeptide=Potri.009G065800.1.p locus=Potri.009G065800 ID=Potri.009G065800.1.v4.1 annot-version=v4.1 MAPRKTPQVSRNPDLVRGIGKYSRSQMYHKRGLWAIKAKNGGVFPKHAPKVKDAAPAEKPPKFYPADDVKKPLPNRRKPKPTKLRDSITPGTVLIILVGR FKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVEKFDDKYFGKKAEKKKKKGEGNFFEADKEGENALPQEKKDDQKAVDAP LIKSLECVPDLKAYLGARFSLKDGMKPHELVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	0	1
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.013G013600 [exp]	2.44	0.9720	RPL18.11
AT4G13170			Ribosomal protein L13 family p...		Potri.002G242600 [exp]	2.44	0.9716	Pt-RPL13.3
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.012G114000 [exp]	2.82	0.9687
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.014G053300 [exp]	3.00	0.9648	RPS11.4
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.008G156300 [exp]	3.16	0.9748	RS3.2
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.004G085300 [exp]	3.46	0.9668	RPL24.1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.008G050200 [exp]	6.92	0.9653
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Potri.012G052700 [exp]	7.21	0.9624	Pt-GBF1.3
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	8.06	0.9679	RPL15.3
AT4G27090			Ribosomal protein L14 (.1)		Potri.008G168600 [exp]	8.71	0.9563

Compare expression of checked genes

Potri.009G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.