Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08490 683 / 0 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1) AT5G65720 85 / 2e-17 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) AT5G26600 60 / 2e-09 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G62130 56 / 4e-08 LCD L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000600 [exp] 94 / 2e-20 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.005G003000 [exp] 64 / 1e-10 AT5G26600 650 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.014G112700 [exp] 62 / 3e-10 AT3G62130 682 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G187200 [exp] 60 / 2e-09 AT3G62130 685 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G002400 [exp] 58 / 9e-09 AT5G26600 647 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031670 [exp] 682 / 0 AT1G08490 691 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10036083 [exp] 135 / 4e-38 AT1G08490 144 / 5e-42 chloroplastic NIFS-like cysteine desulfurase (.1) Lus10019252 [exp] 88 / 2e-18 AT5G65720 734 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10011590 [exp] 88 / 2e-18 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10031445 [exp] 58 / 9e-09 AT5G26600 608 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10038033 [exp] 57 / 1e-08 AT3G62130 657 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10009974 [exp] 57 / 2e-08 AT3G62130 658 / 0.0 L-cysteine desulfhydrase, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10001514 [exp] 57 / 2e-08 AT5G26600 588 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10031190 [exp] 54 / 3e-07 AT1G16540 1012 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10031768 [exp] 50 / 3e-06 AT1G16540 1021 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00266 [poplar] [flax] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Potri.009G066000.1 pacid=42770928 polypeptide=Potri.009G066000.1.p locus=Potri.009G066000 ID=Potri.009G066000.1.v4.1 annot-version=v4.1 ATGGACGGTATGGCCTTAAAATTCCCTTCTTTCAAATTCCTAAACCCTAACACCTCCACCATTCGAAGCCCACCTCTTCTCCGCAAATTCTCCTCCTCCT CTTCCTCACTTCCCGTATCAGCATCGAGTACTACTCTCAGAGAAGCGGGCCCGGCTTCCAACTCCGTTTCACTCGGTCAGTTAACCCGACCCGACTTCCC CATCCTCCACCAGAAGATAAATAACGGGTCAAATCTTGTTTACTTGGACAACGCAGCTACTTCACAGAAACCAATTTCAGTGTTAAAATCCCTGCAAGAT TATTACGAATCTTACAATTCCAATGTTCATCGAGGAATTCATTACTTAAGTGCAAAGGCAACAGAAAAATATGAACAGGCGAGGGAGAAAATTGCAGCAT TTATAAACGCAGAAGAATCTAGGGAGATTGTATTTACCAGAAATGCCACTGAAGCTATTAATTTGGTTGCTTATACTTGGGGGTTTGCAAATTTAAAATC AGGAGATGAGGTTTTATTGACCATCGCGGAACACCATAGTGCGATTGTTCCATGGCAATTTGTGGCTCAGAAGACCGGAGCTGTTTTGAAGTTTGTTAAT TTAAATGAGGATGAAGTTCCGGATGTACTTCAGTTGAAAGAAATGATTTCTAGAAAGACAAAACTTGTTGTGGTGCACCATATATCAAATACACTCGCTT CTTCTCTTCCTATTGAAGACATAGTCCATTGGGCACATGCTGTTGAGGCAAAAGTTCTTGTAGATGCTTGTCAAAGTGTTCCGCACATGCCGGTCGATGT CCGGGACCTTGATGCTGATTTTCTTGTTGCCTCTTCACACAAGATGTGTGGGCCTACAGGCGTTGGATTTTTATATGGTAAAAGTGACATCTTGTCTACC ATGCCTCCATTTTTGGGTGGCGGAGAAATGATCTCTGATGTATTTTTGGATCATTCCACATATGCAGAACCTCCATCAAGATTTGAGGCTGGAACACCAG CAATTGGAGAAGCAATTGGATTAGGAGCAGCAATCGATTATTTGCAAGGAATTGGCATGCAAAAGATCCATGAGTATGAGATGGAGTTGGCTAATTATCT ATATGAAAACCTCTCTACTGTTCCTAACATACGTATCTATGGCCCAAAACCTTCCAAAGGAGTCAATCGTGCTGCGCTTTGTTCTTTCAATGTGAAGAAT ATTCACCCCACGGATCTTGCAACTTTTCTTGACCAACAGCATGGAGTAGCTATCAGATCGGGTCACCACTGTGCTCAACCTCTCCATCGGTATTTAGGAA TCAATGCAAGTGCACGTGCCAGCCTCTATTTTTACAACACTAAAGAGGATGTTGATTATTTCATCCACGCACTCAACGACACTGTTAGCTTCTTTGATTC TTTCAAGTAG
AA sequence Show only first row Show all	>Potri.009G066000.1 pacid=42770928 polypeptide=Potri.009G066000.1.p locus=Potri.009G066000 ID=Potri.009G066000.1.v4.1 annot-version=v4.1 MDGMALKFPSFKFLNPNTSTIRSPPLLRKFSSSSSSLPVSASSTTLREAGPASNSVSLGQLTRPDFPILHQKINNGSNLVYLDNAATSQKPISVLKSLQD YYESYNSNVHRGIHYLSAKATEKYEQAREKIAAFINAEESREIVFTRNATEAINLVAYTWGFANLKSGDEVLLTIAEHHSAIVPWQFVAQKTGAVLKFVN LNEDEVPDVLQLKEMISRKTKLVVVHHISNTLASSLPIEDIVHWAHAVEAKVLVDACQSVPHMPVDVRDLDADFLVASSHKMCGPTGVGFLYGKSDILST MPPFLGGGEMISDVFLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLQGIGMQKIHEYEMELANYLYENLSTVPNIRIYGPKPSKGVNRAALCSFNVKN IHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGINASARASLYFYNTKEDVDYFIHALNDTVSFFDSFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	0	1
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.014G107200 [exp]	1.41	0.9598
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	5.29	0.9501
AT1G11050			Protein kinase superfamily pro...		Potri.017G132800 [exp]	6.32	0.9404
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	9.16	0.9360
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Potri.011G021800 [exp]	14.31	0.9467
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.009G024000 [exp]	14.56	0.9211
AT5G03430			phosphoadenosine phosphosulfat...		Potri.006G123000 [exp]	16.91	0.9301
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	17.00	0.9349
AT5G18130			unknown protein		Potri.019G035600 [exp]	17.74	0.9259
AT1G09130			ATP-dependent caseinolytic (Cl...		Potri.013G017166 [exp]	18.33	0.9492

Compare expression of checked genes

Potri.009G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.