Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MPK3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45640 652 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 593 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT4G01370 540 / 0 ATMPK4 MAP kinase 4 (.1) AT4G11330 528 / 0 ATMPK5 MAP kinase 5 (.1) AT3G59790 519 / 0 ATMPK10 MAP kinase 10 (.1) AT1G07880 517 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 504 / 4e-180 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 499 / 7e-178 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G10210 420 / 6e-147 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 420 / 7e-147 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271700 [exp] 725 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.007G139800 [exp] 618 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 610 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.002G162500 [exp] 538 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 533 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 530 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 526 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.002G032100 [exp] 436 / 4e-153 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G231100 [exp] 435 / 8e-153 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036136 [exp] 689 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 681 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10008339 [exp] 613 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 613 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10023339 [exp] 575 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10038472 [exp] 551 / 0 AT3G45640 535 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10007921 [exp] 540 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 527 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 527 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 522 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G066100.1 pacid=42771773 polypeptide=Potri.009G066100.1.p locus=Potri.009G066100 ID=Potri.009G066100.1.v4.1 annot-version=v4.1 ATGGCGAATTATGCACAGGGAAATGGTGACTTCCCCGCGATTCCGACTCACGGCGGCCAATTCATTCAATACAATATTTTCGGTAATCTTTTTGAAATCA CGTCGAAATATCGACCTCCGATCACTCCGATTGGTCGTGGTGCCTACGGCATCGTCTGCTCTGTGTTGAATTCGGAGACGAACGAGATGGTGGCGGTGAA GAAGATAGCCAACGCTTTTGATAATCAAATGGACGCCAAGCGCACCCTTCGTGAGATTAAACTGCTTCGCCATTTGGATCACGAAAACGTTATTGGTATC AGAGATGTCATTCCTCCACCTCTACGCAGAGAATTTACTGATGTCTACATTGCCATGGAACTTATGGACACTGATCTTCACCAAATTATTCGTTCCAACC AAGGTTTGTCAGAGGAGCATTGTCAGTACTTCTTGTATCAGATTCTTCGAGGACTGAAATATATACACTCTGCTAATATTATCCATAGAGATCTCAAACC CAGCAATTTACTGCTAAATGCAAATTGTGACTTGAAGATATGCGATTTTGGTCTAGCTCGGCCAACTTCGGAGAATGAGTTTATGACAGAGTATGTTGTC ACCAGATGGTATCGTGCACCTGAGTTGTTGCTCAACTCCTCCGACTATACTGCTGCAATTGATGTGTGGTCTGTAGGTTGCATCTTTATGGAGCTTATGA ATAGAAAACCTCTGTTTCCAGGCAAAGATCATGTCCATCAGATGCGCTTATTGACAGAGCTTCTTGGCAAACCCACTGAATCTGATCTTGGTTTTGTCCG GAATGAGGATGCGAGAAGATACATCCAGCAACTCGACTCGCATCCCCGTCGGTCATTAGCTGAGCTTTTCCCACTTGTTCACCCTCTGGCCATTGATCTT ATAGATAAAATGTTGACATTCGATCCCACTAAAAGAATTACTGTTGAAGAAGCATTGGCTCATCCATACCTTGCAAGATTACATGACATAGCAGATGAAC CAGTCTGCTTAGAGCCTTTCTCCTTTGAATTTGAGCAACAACCCTTGGCAGAAGAGCAAATGAAGGATATGATCTATGAGGAGGCTTTAGCACTTAATCC AGAATATGCATGCTAG
AA sequence Show only first row Show all	>Potri.009G066100.1 pacid=42771773 polypeptide=Potri.009G066100.1.p locus=Potri.009G066100 ID=Potri.009G066100.1.v4.1 annot-version=v4.1 MANYAQGNGDFPAIPTHGGQFIQYNIFGNLFEITSKYRPPITPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNQMDAKRTLREIKLLRHLDHENVIGI RDVIPPPLRREFTDVYIAMELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANIIHRDLKPSNLLLNANCDLKICDFGLARPTSENEFMTEYVV TRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRKPLFPGKDHVHQMRLLTELLGKPTESDLGFVRNEDARRYIQQLDSHPRRSLAELFPLVHPLAIDL IDKMLTFDPTKRITVEEALAHPYLARLHDIADEPVCLEPFSFEFEQQPLAEEQMKDMIYEEALALNPEYAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.009G066100 [exp]	0	1	Pt-MPK3.2
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	1.00	0.9510	CBP60.12
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	1.41	0.9507	CPK18
					Potri.018G078801 [exp]	1.73	0.9356
AT4G23810	WRKY	ATWRKY53, WRKY5...	WRKY family transcription fact...		Potri.014G096200 [exp]	6.00	0.9174
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	6.48	0.9075
AT2G46400	WRKY	ATWRKY46, WRKY4...	WRKY DNA-binding protein 46 (....		Potri.002G168700 [exp]	6.92	0.9210
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	7.48	0.9332
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.001G325100 [exp]	8.71	0.8808	NAC114
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	9.48	0.8780
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	10.00	0.9267	LOX3.1

Compare expression of checked genes

Potri.009G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.