Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15350 419 / 2e-142 CYP705A2 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) AT3G20140 419 / 2e-142 CYP705A23 "cytochrome P450, family 705, subfamily A, polypeptide 23", cytochrome P450, family 705, subfamily A, polypeptide 23 (.1) AT3G20950 417 / 2e-141 CYP705A32 "cytochrome P450, family 705, subfamily A, polypeptide 32", cytochrome P450, family 705, subfamily A, polypeptide 32 (.1) AT5G47990 416 / 6e-141 THAD1, THAD, CYP705A5 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) AT2G14100 415 / 1e-140 CYP705A13 "cytochrome P450, family 705, subfamily A, polypeptide 13", cytochrome P450, family 705, subfamily A, polypeptide 13 (.1) AT3G32047 413 / 4e-140 Cytochrome P450 superfamily protein (.1) AT3G20940 412 / 1e-139 CYP705A31P, CYP705A30 "cytochrome P450, family 705, subfamily A, polypeptide 30", cytochrome P450, family 705, subfamily A, polypeptide 30 (.1) AT1G50520 412 / 2e-139 CYP705A27 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) AT3G20100 407 / 2e-137 CYP705A19 "cytochrome P450, family 705, subfamily A, polypeptide 19", cytochrome P450, family 705, subfamily A, polypeptide 19 (.1) AT3G20130 404 / 1e-136 GPS1, CYP705A22 gravity persistence signal 1, "cytochrome P450, family 705, subfamily A, polypeptide 22", cytochrome P450, family 705, subfamily A, polypeptide 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066200 [exp] 988 / 0 AT4G15350 410 / 7e-139 "cytochrome P450, family 705, subfamily A, polypeptide 2", cytochrome P450, family 705, subfamily A, polypeptide 2 (.1) Potri.001G270900 [exp] 938 / 0 AT5G47990 419 / 2e-142 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G065000 [exp] 930 / 0 AT5G47990 425 / 1e-144 THALIAN-DIOL DESATURASE, "cytochrome P450, family 705, subfamily A, polypeptide 5", cytochrome P450, family 705, subfamily A, polypeptide 5 (.1) Potri.009G065100 [exp] 410 / 1e-140 AT1G50520 283 / 1e-90 "cytochrome P450, family 705, subfamily A, polypeptide 27", cytochrome P450, family 705, subfamily A, polypeptide 27 (.1) Potri.006G057900 [exp] 406 / 5e-137 AT2G42250 725 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G052600 [exp] 397 / 3e-133 AT2G42250 512 / 2e-178 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.016G049800 [exp] 392 / 9e-132 AT5G06900 536 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.006G190800 [exp] 387 / 2e-129 AT2G42250 509 / 2e-177 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Potri.006G058200 [exp] 372 / 6e-124 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023827 [exp] 374 / 1e-124 AT2G42250 652 / 0.0 "cytochrome P450, family 712, subfamily A, polypeptide 1", cytochrome P450, family 712, subfamily A, polypeptide 1 (.1) Lus10005878 [exp] 357 / 7e-118 AT5G06900 440 / 1e-150 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10035502 [exp] 349 / 6e-115 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10040868 [exp] 346 / 1e-113 AT5G06900 434 / 5e-148 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10031674 [exp] 263 / 3e-81 AT3G26300 399 / 3e-134 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10013150 [exp] 261 / 9e-81 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 257 / 4e-79 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10012879 [exp] 256 / 8e-79 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10043313 [exp] 254 / 2e-78 AT3G48280 390 / 3e-131 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10033172 [exp] 252 / 1e-77 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G066300.1 pacid=42771730 polypeptide=Potri.009G066300.1.p locus=Potri.009G066300 ID=Potri.009G066300.1.v4.1 annot-version=v4.1 ATGATCGCCATCCAATATGTCCTAGCCATCTTTGTACTATGGGTTATCACAGTCTTCCTTCAATTCATCTTCAAGAGGCCCGGCAAGAAACCTGCCGGTT ATTGCCCCCCTCCAAGCCCACCCACACTTCCTTTGATCGGCCACCTCCATTTATTAACCCCAGTTGCATACAAAGGATTCCATGCTCTCAACAATAAATA TGGCCCTCTCCTCTATCTCCGCTTGGCCACTTATCCTGCTGTTCTTGTCTCATCCGCTCCACTGGCCACAGAAATCTTCAAAGCACTAGATGTCCATTTT ACCTCTAGAATAAAATCCCCTTTTGAGGATAATTTACTATTTGGAAGCTCAACAAGCTTTTTCAATGCCCCGTATGGGGATTACTGGAAATTCATGAAGA AAATTTGTACCACAGAATTGTTGGGGACTAGACAGATGAAGAAGTTAAAGAATGTTAGACGCGAAGAAGTTGTGAGGTTTTTGAGTAAAATGTTGGAGAT AGGTCAGAAACATGAGGTTGCAAATGTGAGTGCTGAGGTATTAACACTAGCAAACAATAGTACTTGCAGGATGATTATGAGTGCTAGGTGTTCAGGGGAA GATAATCAGGCTGAGAAGTGTAGAGGGCTGGTGAGTGAATCCTTTGATCTGGCTGCAAAGCTTGCTTTATTTAGCGTGTTTGGTCCCTTGAAAAGGATAG GTACTTGGTACTTAAGAAAGAAAATTGCCGACGTGCCCCGAAGGTATGATGAATTGTTTGAGAACGTCCTGGTAGAGCATGAGGAGAAAGCGAAGAGAGA AGGTCCTCACATGGAGAATAAAGACTTGATGGATATTCTTTTGGAAGTGTATCATGACAAAAATGCTGAAATAAGGATAACCAGGAAGCAAATGAAGACT TTCTTTCTGGATCTTTTCACAGGAGGTACCAATACTACATCAGATGCCATACTGTGGATCTTAGCAGAGCTTGTCAACCATCCTGCAGCGTTCAAGAAGC TGAGAGAGGAGATAGATTCAGCTGTTGGGACAGAGAGACTTGTGGATGAAGAAGATATCCCAAACCTGCCTTATTTTCAAGCATGTGTTAAGGAAGCAAT GAGGCTAAATCCACCAGTGCCTTTATTTGATAGAATATGCGGTGAAAATTGCAAACTTGGAGGATATGATATACCCAAAGGAATCACAATGATAATGAAC GCATACTCTATTATGAGGGATCCAAAGATATGGGAAAACCCCAACGATTTTATTCCAGAGAGGTTCTTGACTGAACAGGACAACGCCGAGGGGCAAAACT TACAGGTTTACGTCCCTTTTGGTGGAGGAAGGAGAATGTGCCCTGGGACCAACATGACCTCAAGTTTGATTAACTGTAGTGTTACAGCTATGGTTCAGTG TTTTGATTGGAAAGTTCTCAGTGGAGATGGACCAGATGGATCGAAGGTTAACATGGACTCTAAATCAGGCGTGGTAAAGACCATGGCTAAACCATTCATG GCCATTCCTGCTCTCCACCGTAACCTATTTTCTGCTTAA
AA sequence Show only first row Show all	>Potri.009G066300.1 pacid=42771730 polypeptide=Potri.009G066300.1.p locus=Potri.009G066300 ID=Potri.009G066300.1.v4.1 annot-version=v4.1 MIAIQYVLAIFVLWVITVFLQFIFKRPGKKPAGYCPPPSPPTLPLIGHLHLLTPVAYKGFHALNNKYGPLLYLRLATYPAVLVSSAPLATEIFKALDVHF TSRIKSPFEDNLLFGSSTSFFNAPYGDYWKFMKKICTTELLGTRQMKKLKNVRREEVVRFLSKMLEIGQKHEVANVSAEVLTLANNSTCRMIMSARCSGE DNQAEKCRGLVSESFDLAAKLALFSVFGPLKRIGTWYLRKKIADVPRRYDELFENVLVEHEEKAKREGPHMENKDLMDILLEVYHDKNAEIRITRKQMKT FFLDLFTGGTNTTSDAILWILAELVNHPAAFKKLREEIDSAVGTERLVDEEDIPNLPYFQACVKEAMRLNPPVPLFDRICGENCKLGGYDIPKGITMIMN AYSIMRDPKIWENPNDFIPERFLTEQDNAEGQNLQVYVPFGGGRRMCPGTNMTSSLINCSVTAMVQCFDWKVLSGDGPDGSKVNMDSKSGVVKTMAKPFM AIPALHRNLFSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20140		CYP705A23	"cytochrome P450, family 705, ...		Potri.009G066300 [exp]	0	1
AT4G15350		CYP705A2	"cytochrome P450, family 705, ...		Potri.009G066200 [exp]	1.00	0.9919
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.005G205400 [exp]	5.65	0.9507
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	6.70	0.9497
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	8.36	0.9421
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017166 [exp]	10.09	0.9420
AT3G08870			Concanavalin A-like lectin pro...		Potri.006G103200 [exp]	10.19	0.9337
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Potri.002G236400 [exp]	12.40	0.9350	IAGLU.2
AT3G60780			Protein of unknown function (D...		Potri.002G147100 [exp]	13.56	0.9088
AT5G49015			Expressed protein (.1.2)		Potri.008G039901 [exp]	13.85	0.9187
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017232 [exp]	14.69	0.9402

Compare expression of checked genes

Potri.009G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.