Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19485 655 / 0 transferases;nucleotidyltransferases (.1) AT2G34970 93 / 6e-20 Trimeric LpxA-like enzyme (.1) AT4G18300 79 / 2e-15 Trimeric LpxA-like enzyme (.1) AT3G02270 59 / 5e-09 Trimeric LpxA-like enzyme (.1) AT3G55590 50 / 3e-06 Glucose-1-phosphate adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G271800 [exp] 833 / 0 AT5G19485 630 / 0.0 transferases;nucleotidyltransferases (.1) Potri.005G045200 [exp] 67 / 9e-12 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1) Potri.006G090300 [exp] 45 / 5e-05 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036081 [exp] 729 / 0 AT5G19485 638 / 0.0 transferases;nucleotidyltransferases (.1) Lus10026802 [exp] 725 / 0 AT5G19485 633 / 0.0 transferases;nucleotidyltransferases (.1) Lus10018991 [exp] 72 / 3e-13 AT2G34970 869 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10033841 [exp] 72 / 3e-13 AT2G34970 880 / 0.0 Trimeric LpxA-like enzyme (.1) Lus10024356 [exp] 43 / 0.0003 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 40 / 0.0008 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G066400.2 pacid=42772938 polypeptide=Potri.009G066400.2.p locus=Potri.009G066400 ID=Potri.009G066400.2.v4.1 annot-version=v4.1 ATGGATTTTCAAGTTGTCGTCCTTGCCGGTGGCACCTGTAAAAAATTACTTCCTCTCGTCTCCAAGGATGTGCCAAAAGCTTTACTTCCGGTCGCGAACC GGCCGGTTCTTTCTTACGTGTTGGAGCAGTTGGAACTCAGTAATCTTAAGGATCTTATAGTTGTTGTTGAAGGGGAAGATGCAGCTCTTCACGTTGGTGG TTGGATATCAAATGCTTATGTTGATCGTTTACATGTCGAGGTTGCTGCAGTTCCAGAGGATGTTGGAACAGCTGGTGCTCTTCGGGCCATTGCTCACCAC TTGACTGCAAATGACATTTTGGTTGTGAGTGGAGATCTTGTTTCTGACATTCCTCCTGGTGCACTTGCAGCTGTTCATAGACAGCACGATGCAGTGGTGA CGACAATGCTTTGCTCTGCTCCTGTCAGTGGACCTACAGAGTCTGGATCTTCAGGTGGAAAAGATAAAATCAAGAAACCAAGACGCCACAACATCATTGG CTTGGACCCCTCAAAACAGTTTTTATTACACATAGCAACAGGAGCTGAAGTTGAGAAAGAAATTCGAATCCAGAAAAGCATTCTTCGTGCAGTGGATCAG ATGGAAATACGAGCTGATCTCATGGATGCTCATATGTATGCATTCAAGAGGTCTGTTTTGCAAGAAGTTTTGGATGAAAAGGATAAATTTCGAAGCTTAA AAGAGGATATGCTGCCTTATCTTGTTCGGAGTCAGATGAAATCAGAGGTATTATTGAATGGTGCACCACAAGCAAAAAATGGAAATGAGAAGGTTAGTTC CCAAAACAACCAAGCAGTGGTATCTCGGATCTTGACTAATGCATCTACTCCGAGCTTCCATGATCTTTATGCTTCGAGTAACAACGATTCTTCTCTGGTT CGAAGAATCCATAAATGCTGTGCTTATATTGCCAGCGAGAGCAGATACTGTCAGCGCTTAAATTCTATTCAAGCATTCAGTGATATAAATCGAGATGTCA TAGGTGATGCCAGTCATCTGTCAGGCTATTCCTTCTCTTCTCATAACAACATCATACATCCTTCTGCACAGCTTGGATCAAGAACTACTGTGGGGCCTCA TTGTATGCTATGGGAAGGTTCACAAATGGGTGACAAGTGTAGTGTCAAGCGATCTGTCATTGGCCGTCACTGCCGGATAGGTTCCAATGTGAAGGTTGTT AATTCAGTCATCATGAACCATGTCACCATTGGAGATGGTTGTTCAATCCAAGGTTCTGTGATTTGTAGCAATGCACAGCTCCAAGAGCGAGCTGTGTTGA AAGACTGCCAGGTTGGAGCAGGTTTTGTGGTTACCGCAGGCAGTGAGCACAAGGGAGAGTCTTTGGCTAGAAAATAA
AA sequence Show only first row Show all	>Potri.009G066400.2 pacid=42772938 polypeptide=Potri.009G066400.2.p locus=Potri.009G066400 ID=Potri.009G066400.2.v4.1 annot-version=v4.1 MDFQVVVLAGGTCKKLLPLVSKDVPKALLPVANRPVLSYVLEQLELSNLKDLIVVVEGEDAALHVGGWISNAYVDRLHVEVAAVPEDVGTAGALRAIAHH LTANDILVVSGDLVSDIPPGALAAVHRQHDAVVTTMLCSAPVSGPTESGSSGGKDKIKKPRRHNIIGLDPSKQFLLHIATGAEVEKEIRIQKSILRAVDQ MEIRADLMDAHMYAFKRSVLQEVLDEKDKFRSLKEDMLPYLVRSQMKSEVLLNGAPQAKNGNEKVSSQNNQAVVSRILTNASTPSFHDLYASSNNDSSLV RRIHKCCAYIASESRYCQRLNSIQAFSDINRDVIGDASHLSGYSFSSHNNIIHPSAQLGSRTTVGPHCMLWEGSQMGDKCSVKRSVIGRHCRIGSNVKVV NSVIMNHVTIGDGCSIQGSVICSNAQLQERAVLKDCQVGAGFVVTAGSEHKGESLARK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19485			transferases;nucleotidyltransf...		Potri.009G066400 [exp]	0	1
					Potri.004G093250 [exp]	6.48	0.8822
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	7.48	0.8676
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.015G042100 [exp]	7.93	0.8254
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	8.94	0.8759
AT4G40045			unknown protein		Potri.008G025700 [exp]	10.39	0.8719
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	16.30	0.8414
AT5G04000			unknown protein		Potri.016G044001 [exp]	17.88	0.8673
AT5G18420			unknown protein		Potri.004G092400 [exp]	21.07	0.8183
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Potri.003G022001 [exp]	22.24	0.7830
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	22.24	0.8731

Compare expression of checked genes

Potri.009G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.