Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYCB1.2,4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26760 430 / 4e-150 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT3G11520 377 / 8e-129 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT5G06150 378 / 1e-128 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT4G37490 361 / 2e-122 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT1G76310 267 / 1e-85 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 265 / 6e-85 CYCB2;3 Cyclin B2;3 (.1) AT1G16330 248 / 4e-76 CYCB3;1 cyclin b3;1 (.1) AT2G17620 233 / 2e-72 CYCB2;1 Cyclin B2;1 (.1) AT4G35620 229 / 6e-71 CYCB2;2 Cyclin B2;2 (.1) AT1G34460 194 / 6e-57 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G272000 [exp] 702 / 0 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.016G033000 [exp] 421 / 2e-145 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 420 / 4e-145 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.009G165800 [exp] 272 / 8e-88 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.002G010000 [exp] 272 / 3e-87 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G251400 [exp] 261 / 3e-83 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 260 / 6e-83 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.010G173200 [exp] 238 / 7e-72 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 231 / 3e-69 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036080 [exp] 477 / 5e-168 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 474 / 2e-166 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10039033 [exp] 304 / 1e-99 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10003800 [exp] 296 / 2e-96 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10010483 [exp] 271 / 3e-87 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1) Lus10012261 [exp] 270 / 8e-86 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10016015 [exp] 260 / 4e-83 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10030746 [exp] 249 / 7e-79 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 249 / 9e-79 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10001765 [exp] 223 / 3e-65 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G066600.1 pacid=42772594 polypeptide=Potri.009G066600.1.p locus=Potri.009G066600 ID=Potri.009G066600.1.v4.1 annot-version=v4.1 ATGGGTTCAAGAAATCTTGTTGTTTCTTATCAACAACAACCCAGAGGAGAAGCGAAGCAGAAGGCTTTTGCACCAGCAGATGGAAGGAATAGAAGAGTGC TTCAAGATATTGGCAATTTAGTGAATGATCGTGTATCTTTGCAAGGGAAGAAACCAATCACAGAAGTTGTAGATTCTGTGGTTGCTCGTAATGTGAGGGC TCCTGCAGCTACAAAGGTACCAGCAGCAGCAATAAAGAAGGTTAACGAGAAGCATAGACCTGAGGATGTCATTGTGATAAGCTCTGAGGAAACAGAAAAG AGTAAACCTGTTAGCAGAGTACCAAGGAAAGAAGTCAAGACACTCACTTCAATCCTCACTGCTCGAAGCAAGGCCGCTTGTGGTAAGCCTGAGGATACAC TGGTGGAAATTGATGCTGCTGATGTTAATAATGAGTTGGCAGTAGTTGAATACGTTGATGATATGTACGAGTTTTACAAGCTTACAGAGGTTGACAGTAG GGTACATGACTACTTGCAATTCCAACCAGACATCAATGCAAAGATGAGATCGATCCTCGTAGATTGGCTGATTGATGTTCATCGAAAGTTTTTACTAATG CCGGAAACTCTCTATCTTACCATAAATATTGTGGATAGGTTCCTAGCATTGAAGTTGGTACCAAGGAGGGAACTTCAGTTGGTTGGCATCAGCTCAATGC TTATAGCTTGCAAGTACGAAGAAATATGGGCACCAGAGGTTAATGACTTTGTTCGCATATCTGACAATGCCTATATAAGAGAGCAAGTTCTGGCAATGGA GAAAGAAATCTTAGGAAAGCTAGAGTGGTATCTAACAGTTCCAACACCCTATGTTTTCCTTGTTAGATACATCAAGGCCTCTATTCCATCCGATGAAGAG ACAGAGAATCTGGTGTTCTTCCTGTCTGAACTTGGTCTGATGCAATATCCGGTTGTTGTCAAGTATGGTCCTTCAAAAATTGCCGCATCAGCAGTGTATG CTGCTCGATGCACTCTGGATAAGATCCCTTTCTGGACTGAAACTTTAAAGCACCACACTGGCTACACTGAAGATATGTTAAGGGATTGTGCAAAGCTCCT GGTTCATTTTCACACTGCAGCTGCTGAAAGTAAGCTCAAGGCTGTCTACAAGAAATTCTCAAGTGCAGATCGTGGTGCTGTGGCTCTTCTTACCCCAGCC AGAAGCCTTTCATCTGAATTGCCATGA
AA sequence Show only first row Show all	>Potri.009G066600.1 pacid=42772594 polypeptide=Potri.009G066600.1.p locus=Potri.009G066600 ID=Potri.009G066600.1.v4.1 annot-version=v4.1 MGSRNLVVSYQQQPRGEAKQKAFAPADGRNRRVLQDIGNLVNDRVSLQGKKPITEVVDSVVARNVRAPAATKVPAAAIKKVNEKHRPEDVIVISSEETEK SKPVSRVPRKEVKTLTSILTARSKAACGKPEDTLVEIDAADVNNELAVVEYVDDMYEFYKLTEVDSRVHDYLQFQPDINAKMRSILVDWLIDVHRKFLLM PETLYLTINIVDRFLALKLVPRRELQLVGISSMLIACKYEEIWAPEVNDFVRISDNAYIREQVLAMEKEILGKLEWYLTVPTPYVFLVRYIKASIPSDEE TENLVFFLSELGLMQYPVVVKYGPSKIAASAVYAARCTLDKIPFWTETLKHHTGYTEDMLRDCAKLLVHFHTAAAESKLKAVYKKFSSADRGAVALLTPA RSLSSELP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.009G066600 [exp]	0	1	Pt-CYCB1.2,4
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	8.54	0.9393
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	12.08	0.9385	SNAP30.2
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Potri.001G254500 [exp]	15.09	0.9383	UBC19.2
AT4G08330			unknown protein		Potri.005G070600 [exp]	18.54	0.9324
AT4G02800			unknown protein		Potri.002G053100 [exp]	18.76	0.9355
AT3G03130			unknown protein		Potri.019G046801 [exp]	19.89	0.9079
AT4G32830		ATAUR1	ataurora1 (.1)		Potri.006G235000 [exp]	22.02	0.9354
					Potri.006G190400 [exp]	23.36	0.9343
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	25.09	0.9326
AT4G28430			Reticulon family protein (.1)		Potri.017G014300 [exp]	28.80	0.9268

Compare expression of checked genes

Potri.009G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.