Plant FIBer expression Database

Potri.009G066800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26770 785 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
AT2G40820 527 / 0 unknown protein
AT3G56480 515 / 1e-180 myosin heavy chain-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G272300
[exp]
880 / 0 AT2G26770 773 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Potri.006G035300
[exp]
580 / 0 AT2G40820 681 / 0.0 unknown protein
Potri.016G033100
[exp]
578 / 0 AT2G40820 687 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036073
[exp]
775 / 0 AT2G26770 783 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Lus10026809
[exp]
741 / 0 AT2G26770 745 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2)
Lus10038998
[exp]
519 / 0 AT2G40820 611 / 0.0 unknown protein
Lus10027293
[exp]
512 / 2e-179 AT2G40820 614 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF16709 SCAB-Ig Ig domain of plant-specific actin-binding protein
CL0159 PF16711 SCAB-ABD Actin-binding domain of plant-specific actin-binding protein
CL0159 PF16712 SCAB_CC Coiled-coil regions of plant-specific actin-binding protein
Representative CDS sequence
>Potri.009G066800.4 pacid=42772671 polypeptide=Potri.009G066800.4.p locus=Potri.009G066800 ID=Potri.009G066800.4.v4.1 annot-version=v4.1
ATGACCAGGGTAAACCGTGATTTTGGAGATACTATGCAAAAAGATGCTGTCCCAGCTGTATCAGCTGATGTTGCATTTGCTTCTAGTCGGTTTCCTAATT
ACAAAATTGGAGCTAACAATCAGATTGTGGATGCAAAAGATAGCCCAAAAGTATTGTCCATGAAGGAGGTTGTGGCACGCGAGACTGCTTTACTTTTGGA
ACAGCAGAAACGCCTCTCTGTCCGTGACCTTGCCAATAAATTTGAAAAGGGATTGGCTGCTGCTGCCAAGTTGTCAGAAGAGGCTAGGCTCAGAGAGGCA
GCTTCATTAGAGAAACATGTTCTATTGAAGAAGCTTAGGGATGCGCTAGAATCATTAAAAGGACGAGTGGCAGGTAGAAACAAGGATGATGTGGAAGAGG
CTATTGCCATGGTGGAAGCATTGGCAGTTCAGCTGACTCATAGGGAAGGAGAGTTGATTCAAGAAAAAGCAGAAGTAAAGAAACTAGCAAATTTTCTCAA
GCAGGCTTCAGAGGATGCCAAGAAACTTGTCGACGGGGAAAGAGCTTATGCTCGTGCTGAAATTGAGAGTGCGAGAGCAGCAGTCCAGAGGGTGGAAGAA
GCGATTCAGGAACATGAACGAATGTCTCGAGCTTCTGGAAAGCAGGACTTGGAAGAATTAATGAAGGAGGTTCAAGAGGCTAGAAGGATCAAAATGTTGC
ATCAGCCAAGTAAGGTCATGGACATGGAACATGAGATACGAGCATTGAGGATTCAACTTGCTGAGAAGTCTAAACGTTCTCTGCTGCTTCAAAAGGAGCT
GGCAAGGAGCAGGCGAGCAGAGCAGAGCATATTTCAATTATTTGAATTGGATGGCACTGAAGCTTTAGGTTCGTGTTTGCGGATCAATCCTTGCTCTGAT
AATGCTCCAGAACTTTCAAAATGTTCCATTCAGTGGTATCGTCTATCATCTGATGGTGGAAAAAAGGAGCTTATATCAGGAGCTACCAAACCAGTTTATG
CTCCAGAGCCTTTTGATGTTGGGCGAGTCCTGCAAGCTGAAATTATTTCTGATGGCCAACAATTTTCTTTGAGCACTACTTGTCCCATTGATCCTGCTGC
TGGTCTGGGAAGTTATGTGGAGGCACTTGTGCGAAAACATGATGTTGAATTCAATGTCATTGTTACCCAGACGAATGGGGAAGATCATCCATCAGAATCT
ATTCATGTGCTTCATGTCGGAAAGATGAGGATAAAGCTTCGGAAAGGGAAGTCGACAAATGCTAAAGAGTACTACTCTACTTCAATGCAGCTGTGTGGAG
TTAGAGGAGGTGGGAATGCTGCAGCTCAAGCATTGTTTTGGCAAGCAAAGAAAGGGCTTTCCTTCGTATTAGCATTTGAATCTGCAAGAGAGAGGAATGC
AGCCATTATGCTTGCAAGAAGGTTTGCTTTTGATTGCAATATTATGCTTGCCGGGCCAGATGACAGAGCTCGTTTAGGATCTTAA
AA sequence
>Potri.009G066800.4 pacid=42772671 polypeptide=Potri.009G066800.4.p locus=Potri.009G066800 ID=Potri.009G066800.4.v4.1 annot-version=v4.1
MTRVNRDFGDTMQKDAVPAVSADVAFASSRFPNYKIGANNQIVDAKDSPKVLSMKEVVARETALLLEQQKRLSVRDLANKFEKGLAAAAKLSEEARLREA
ASLEKHVLLKKLRDALESLKGRVAGRNKDDVEEAIAMVEALAVQLTHREGELIQEKAEVKKLANFLKQASEDAKKLVDGERAYARAEIESARAAVQRVEE
AIQEHERMSRASGKQDLEELMKEVQEARRIKMLHQPSKVMDMEHEIRALRIQLAEKSKRSLLLQKELARSRRAEQSIFQLFELDGTEALGSCLRINPCSD
NAPELSKCSIQWYRLSSDGGKKELISGATKPVYAPEPFDVGRVLQAEIISDGQQFSLSTTCPIDPAAGLGSYVEALVRKHDVEFNVIVTQTNGEDHPSES
IHVLHVGKMRIKLRKGKSTNAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGLSFVLAFESARERNAAIMLARRFAFDCNIMLAGPDDRARLGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26770 SCAB1 stomatal closure-related actin... Potri.009G066800
[exp]
0 1
AT4G33860 Glycosyl hydrolase family 10 p... Potri.009G087700
[exp]
1.73 0.7661
Potri.004G062700
[exp]
8.48 0.7388
AT1G18700 DNAJ heat shock N-terminal dom... Potri.017G112200
[exp]
9.21 0.7958
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Potri.008G140500
[exp]
12.88 0.7668
AT1G12460 Leucine-rich repeat protein ki... Potri.003G117500
[exp]
17.86 0.7193
AT3G07470 Protein of unknown function, D... Potri.002G238900
[exp]
18.49 0.6723
AT2G01950 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like ... Potri.010G101100
[exp]
21.67 0.7464
AT4G16380 Heavy metal transport/detoxifi... Potri.006G019100
[exp]
26.94 0.6907
AT5G18610 Protein kinase superfamily pro... Potri.008G046500
[exp]
28.61 0.7293 Pt-PNPK2.2
AT5G02390 DAU1 DUO1-activated unknown 1, Prot... Potri.001G239500
[exp]
33.82 0.7158

Potri.009G066800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.