Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12260 669 / 0 unknown protein AT5G60700 114 / 2e-26 glycosyltransferase family protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G272400 [exp] 1102 / 0 AT5G12260 665 / 0.0 unknown protein Potri.012G121826 [exp] 309 / 1e-102 AT5G12260 156 / 9e-45 unknown protein Potri.012G123450 [exp] 113 / 3e-30 AT5G12260 97 / 2e-25 unknown protein Potri.009G010900 [exp] 126 / 5e-30 AT5G60700 1170 / 0.0 glycosyltransferase family protein 2 (.1) Potri.004G212000 [exp] 125 / 1e-29 AT5G60700 1167 / 0.0 glycosyltransferase family protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036072 [exp] 775 / 0 AT5G12260 620 / 0.0 unknown protein Lus10041317 [exp] 128 / 1e-30 AT5G60700 1204 / 0.0 glycosyltransferase family protein 2 (.1) Lus10037396 [exp] 111 / 4e-25 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G066900.1 pacid=42772609 polypeptide=Potri.009G066900.1.p locus=Potri.009G066900 ID=Potri.009G066900.1.v4.1 annot-version=v4.1 ATGGCAGGCCTACCAAGAAGCTTACTCCTTCCCATCATTTTCACCTCCATTGGTCTCATCATCCTCTTCTCCCTATACCAATCCACTCACCACATCCCTA GCGCTGAATTTACTTCCAGTAACAACCCAATAAAAGCCCCAATTGCCCGATTTGCCCCTCAAAACTTCACTCTCCTAATCAAAGTTCTCGCCTTCAACCG CCTAGACTCACTCTCCAGGTGCCTCAACTCCCTCTCTTCCGCCAACTACGGTGGCGACACTGTCCACCTCCACATCCACATTGATCATTTTGCCCTCACC AATGAATCCCTTAACGTTATTGATAAAAAACTTGAGGAATCGCGAAAAGTTTTGAACTTTGTTGATGGGTTTGATTGGAAATTTGGAAACAAAGTTGTGC ATTATAGGACTAATAATGTTGGGTTGCAAGCTCAATGGCTAGAAGCTTGGTGGCCAAGTTCAGATCATGAGTTTTCGTTTATTGTTGAGGATGATGTGGA GGTTTCGCCGTTGTTTTATAAATTTGTGAGGGGTTTGATTGTTAATTACTATTACAATGTGTCGAATTTTAGTCCTTTTATATATGGTGCTTCACTTCAG CGTCCACGGTTTGTCCCAGGTAAACATGGAAACAAAATACAATTGGATAGTGAAACGCATCTTTTCTTGTACCAGTTGGTTGGTACTTGGGGCCAGATTC TCTTTCCAAAACCTTGGAAAGAGTTTAGGTTGTGGTATGATCTGCACAAGTCCAAGGGTATCAAGCCATTGCTTGATGGGATGGTGACTAATGGATGGTA CAAAAGGATTGGAGAAAGAATCTGGACTCCTTGGTTCATTAAATTCATTCACTCTAGAGGTTATTTTAACATCTATACAAATTTTCAGCATGAGAGAGCA CTCAGTGTCTCTCACAGGGATGCTGGTGTTAACTATGGGAAAACTGCTGGGCCTGACTCCCAATTATTGGATGGAAGTTCTCTTGACTTCAACTTACTGG AAATGCAACCTTTGAGCAATCTGAAATGGTATGATTACTGCTTCAGAGAAGTACTTCCTGGAAGAGTTGGAAGGACCTTGGATGAAGTTGGGTCTATTCT TCGGACTGTGCAGGAAGATCAGAGTGTTCTGCTTGTGAATATATTTGGGGCATCAGATACAATCACGAGGAACATGCTTTGCCACTTTGAGAGGCTAAAT ATAAGGAACTATATATTGATTGGCCCTGGGTCTGATTTTTTATTTGATCTTGCTAGAAGAGGGCATCCTGTGATTGATGCTGACCAGTTTTTCAATTATC ATAGAGCACAGAAAGTAATGGGATTTCAACATTCCAGTGCAGAGCTGATGAAGAACATTTTAGTGAATGCTTATGTAATCAAGAAGTGTTTAGAAAATGG GTATGATTCTTTGATAGTGGATGCAAACATGTTGGTTCTCAGTAAAGTTCAAGAGTTCATTGATCCTACTAATGATTTCTATGCTGGGAAGAGCTTGGGA TTTTTCTTTGTTAAGAGCTCTTCTTCTGCTCAAGAAATTTGGGCTGGTCTCCTGAAGAAGGTTGCTGTCACAAAAGGTAATGTTTTGTTCCAAGGAGAGA ACACAGATTTTGTTTACTTAGTGAAGTTGTTGGAACAGAATGGTGTGAGAATTCACAGGGTTGATGAGGCGAGCGTTGGCATCCAGATTCATGCCGATAC TTCTAATCAATCATCTTTGGAGGCTGGGAAGAAGATGGCTTATTGGTTTGCAGGCACAGGTGTGGATTTGATTCAAAAGCGGCTTCAAGAATTGAGTTTG TGGGTTGTGGATGGTGACTCTTCTTGCTCTGCTGTTGTTTGTCACCAGTCATAG
AA sequence Show only first row Show all	>Potri.009G066900.1 pacid=42772609 polypeptide=Potri.009G066900.1.p locus=Potri.009G066900 ID=Potri.009G066900.1.v4.1 annot-version=v4.1 MAGLPRSLLLPIIFTSIGLIILFSLYQSTHHIPSAEFTSSNNPIKAPIARFAPQNFTLLIKVLAFNRLDSLSRCLNSLSSANYGGDTVHLHIHIDHFALT NESLNVIDKKLEESRKVLNFVDGFDWKFGNKVVHYRTNNVGLQAQWLEAWWPSSDHEFSFIVEDDVEVSPLFYKFVRGLIVNYYYNVSNFSPFIYGASLQ RPRFVPGKHGNKIQLDSETHLFLYQLVGTWGQILFPKPWKEFRLWYDLHKSKGIKPLLDGMVTNGWYKRIGERIWTPWFIKFIHSRGYFNIYTNFQHERA LSVSHRDAGVNYGKTAGPDSQLLDGSSLDFNLLEMQPLSNLKWYDYCFREVLPGRVGRTLDEVGSILRTVQEDQSVLLVNIFGASDTITRNMLCHFERLN IRNYILIGPGSDFLFDLARRGHPVIDADQFFNYHRAQKVMGFQHSSAELMKNILVNAYVIKKCLENGYDSLIVDANMLVLSKVQEFIDPTNDFYAGKSLG FFFVKSSSSAQEIWAGLLKKVAVTKGNVLFQGENTDFVYLVKLLEQNGVRIHRVDEASVGIQIHADTSNQSSLEAGKKMAYWFAGTGVDLIQKRLQELSL WVVDGDSSCSAVVCHQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12260			unknown protein		Potri.009G066900 [exp]	0	1
AT1G34350			unknown protein		Potri.013G114800 [exp]	1.00	0.9521
AT2G40820			unknown protein		Potri.016G033100 [exp]	3.74	0.9172
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.016G102300 [exp]	5.91	0.8969
AT5G05800			unknown protein		Potri.008G196901 [exp]	8.48	0.9275
AT3G13410			unknown protein		Potri.008G223987 [exp]	8.77	0.9151
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	9.79	0.9209
AT1G29270			unknown protein		Potri.004G060800 [exp]	13.56	0.8782
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	14.07	0.9160
AT5G39130			RmlC-like cupins superfamily p...		Potri.011G163800 [exp]	15.74	0.8675	GER2.27
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	16.58	0.8883

Compare expression of checked genes

Potri.009G066900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.