Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18485 501 / 5e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 485 / 6e-159 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 480 / 3e-157 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 476 / 9e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 465 / 1e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 464 / 5e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 457 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 452 / 2e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 445 / 1e-143 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 433 / 5e-140 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G156800 [exp] 528 / 2e-176 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 528 / 9e-175 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 501 / 5e-163 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 496 / 5e-162 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 478 / 2e-157 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 478 / 2e-156 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 477 / 9e-156 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 476 / 1e-154 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 471 / 4e-152 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036071 [exp] 1089 / 0 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 517 / 2e-170 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 514 / 2e-170 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 515 / 9e-170 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 512 / 3e-169 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 513 / 4e-165 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 481 / 3e-157 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 476 / 1e-153 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 468 / 1e-152 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 460 / 8e-151 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G067000.1 pacid=42772885 polypeptide=Potri.009G067000.1.p locus=Potri.009G067000 ID=Potri.009G067000.1.v4.1 annot-version=v4.1 ATGTTCTCATTCTCCAACAATGCAAGTGTAAAAGCTTTTCACCATCTGCTTTCAACACTCTCATGCAAACACTCCTCTTCTTTCTCCACACACGCTAGTC TCCTCTCTCTAATCTCCAACGCCAAAACTCTCCCCCAAACCAAGCAATCTCACGCCTCTGCACTCTTCAATGCCTTCCTTCCTCAAAGTATCTCTCTTTG TGCCTCTCTCATCCTCAAGTACGCCACTTTTCATGACCCCACCACCTCTCTCTATCTGTTTCATCAAACTCTTCCTTTCTCTCGCTCTGCTTTCTTGTGG AACACTCTCATTCGCGCTTTGTCGGTGGCACGCGTTAATGATGATTTTAGAACATATAATCAAATGGTTAAAATGGGTGTTAGGCTTGATGATCACACCT TTCCTTTTGTGCTGAAAGCTTGTGCCGATAGTTTGAGTGTTCAAAAAGGTAGAGAGATTCACGGGGTTGTGTTTAAACTTGGGTTTGATTCGGATGTGTT TGTAGGGAACACATTATTATTGTTTTATGGGAATTGTGGGGGTTTGAAAGATGTGAAGAGGGTGTTTGATGAAATGCTTGAAAGGGATGTTGTGTCGTGG AATTCGGTCATTGGGGTGTTTTCGGTTCATGGTTTCTATGCCGAAGCAATTCATTTATTTTGTGAAATGAATTTGAGGTCTGGGTTTAGGCCAAATATGG TTAGTATTGTGAGTGTTTTGCCGGTTTGCGCGGGACTTGAGGATGGGGTTACGGGGAGGCAAATTCATTGTTATGTTGTGAAGACTGGCTTGGATTCTCA GGTGACTGTAGGGAATGCTTTGGTTGACGTGTATGGGAAATGCGGGTATGTGAAAGACTCGAGGCGTGTTTTTGATGAAATTTCAGAGAGAAATGGGGTT TCTTGGAATGCAATAATTACTAGTCTTGCTTATCTTGAGCGTAATCAAGATGCGTTGGAGATGTTTAGATTGATGATTGATGGAGGAGTGAAGCCAAATT CTGTCACTTTTTCCAGTATGTTGCCTGTCTTGGTTGAATTAAAACTTTTTGACTTCGGGAAGGAAATTCACGGGTTTAGTCTAAGATTTGGACTTGAATC TGATATTTTTGTTGCCAATGCTTTGATTGATATGTATGCAAAATCAGGTCGTTCACTTCAAGCATCCAATGTGTTTAACCAGATAGGTGAAAAGAATATT GTTTCGTGGAATGCCATGGTAGCTAATTTTGCTCAAAATAGGCTTGAATTAGCAGCTGTAGATTTAGTGAGGCAAATGCAAGCTGACGGTGAAATACCAA ATTCTGTCACCTTCACGAATGTTCTTCCAGCGTGTGCCCGAATTGGATTCCTTCGTCCTGGAAAAGAAATCCATGCAAGGGCAATTCGCACAGGGTCCTC TGTTGATCTATTTGTGTCAAATGCTCTGACAGACATGTATGCAAAATGTGGTTGTCTAAATCTTGCTCGAAGAGTCTTTAAGATCTCCCTTAGAGATGAA GTATCTTACAACATTTTAATTATAGGCTACTCTCAAACAACTAATTGCTCAGAATCTCTTCGTTTATTCTTGGAAATGGGGATTAAGGGTATGAAGCTTG ATGTAGTTTCCTATATGGGTGTCATTTCAGCGTGTGCAAATCTTGCTGCATTGAAACAAGGGAAAGAGGTTCATGGATTAGCAGTAAGAAAGCATTTGCA CACGCACCTCTTTATTGCCAATGCACTTTTGGACTTCTATATCAAATGTGGACGAATTGATCTTGCTGGTAAGGTCTTTCGTCAAATTCCAAGCAGGGAC ACGGCCTCTTGGAATTCTATGATTTTAGGTTACGGAATGCTGGGTGAATTGACGATTGCTATCAACCTTTTTGAAGCAATGAAGGAAGATGGGGTGGAAT ATGATTCAGTCTCATACATTGCGGTCTTGTCTGCTTGCAGTCATGGAGGGCTAGTTGAAGAGGGGAAGAAATATTTTGAGCATATGCAGGTCCAGAATAT TAAGCCAACGCAAATGCACTATGCTTGTATGGTCGATCTCCTTGGCCGGGCTGGACTTATAGAGGAAGCAGTAAAACTTATTGAAAGCTTACCCATTGAA CCCGATGCCAATGTATGGGGTGCTTTGCTTGGGGCATGCCGAATACATGGGTATATTGAGTTGGCTCATTGGGCAGCTGAACATTTGTTCAAGTTGAAAC CCCAGCATTCTGGATACTACTCGGTTCTTTCAAACATGTATGCAGAAGCTGGAAAATGGGACGAGGCAAACCAGGTAAGGAAACTGATGAAGTCGAGAGG TGCAAAGAAAAATCCCGGTTGCAGTTGGGTTCAGATTGATAACCAGGTTCATGCTTTTGTAGCTGGAGAGAGAATGATGAATGTTGATTCAAGTCTTCTA TGTGCAGATCCCTGA
AA sequence Show only first row Show all	>Potri.009G067000.1 pacid=42772885 polypeptide=Potri.009G067000.1.p locus=Potri.009G067000 ID=Potri.009G067000.1.v4.1 annot-version=v4.1 MFSFSNNASVKAFHHLLSTLSCKHSSSFSTHASLLSLISNAKTLPQTKQSHASALFNAFLPQSISLCASLILKYATFHDPTTSLYLFHQTLPFSRSAFLW NTLIRALSVARVNDDFRTYNQMVKMGVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSW NSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGV SWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNI VSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLRDE VSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRD TASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIE PDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGERMMNVDSSLL CADP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	0	1
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	1.00	0.9348
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	2.82	0.9090
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	3.16	0.9024
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	4.24	0.9039
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	7.48	0.9003
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	7.74	0.8445	Pt-ATGLDH.1
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	12.48	0.9025
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	12.96	0.8959
AT3G02330			Pentatricopeptide repeat (PPR)...		Potri.004G111300 [exp]	13.07	0.8448
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	13.41	0.8942

Compare expression of checked genes

Potri.009G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.