Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11900 258 / 3e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 119 / 6e-29 PGR3 proton gradient regulation 3 (.1) AT2G31400 115 / 9e-28 GUN1 genomes uncoupled 1 (.1) AT5G59900 112 / 7e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 112 / 1e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G51965 111 / 2e-26 ABO5 ABA Overly-Sensitive 5 (.1) AT3G06920 108 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 108 / 3e-25 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 107 / 4e-25 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74750 106 / 1e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G273100 [exp] 619 / 0 AT1G11900 272 / 8e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 122 / 3e-30 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 114 / 1e-27 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 113 / 5e-27 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 112 / 6e-27 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 110 / 4e-26 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.002G109500 [exp] 110 / 4e-26 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G217600 [exp] 109 / 7e-26 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 108 / 1e-25 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003424 [exp] 125 / 3e-31 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10027916 [exp] 112 / 7e-27 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 112 / 1e-26 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 112 / 1e-26 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 111 / 2e-26 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 109 / 1e-25 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 108 / 3e-25 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10039056 [exp] 107 / 6e-25 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037592 [exp] 105 / 2e-24 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10013283 [exp] 105 / 2e-24 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G067400.1 pacid=42771091 polypeptide=Potri.009G067400.1.p locus=Potri.009G067400 ID=Potri.009G067400.1.v4.1 annot-version=v4.1 ATGAGAAATTTTGTTAATGTTGTAGCGAGATCCTTCTTTCTATCAAGCAGCCTCCTTTTTCATCTTCACAAAGTTCGTTTCTTCCTTCGGAAGAATTGTA TCACATCCATCCCAGTTGGTTCTCATTGGATTTTGCCCCACTTTGCCACAATTACTGAAGTCATTGGTCATTACAAGCAACTCACAACACGAGCGTCTTT TGATGGAGAGGAGATCAAGGATGATAACTTGAATCAAATGCTTGAAGCTGTTGAAAATGCCCCAGAATGCACTACTAGGAAAGTCGGAACAGCTTATGTC CATAACTTATGTAAAGCTGGAACTCTTTTTGCTGCGGTTAGACTGCTGCGATTGTTACGCGATAAAAACATTTTCCTTGGTCCTAGTGCTTATAATATAA TTTTGGTGACAGCTAGTGAAAAAAACGATGTTGAGATTTTGTCCCAGGTTTTCAAGGATTTGATCTTGTCTTTTCAGTCTTTGCCTTCATCTTTGTATCT GAAACTTGCCAGGGGTTTTGTGAAGTCAAACGATGATGTCCAGCTACTGAGACTTGTCAAAGAAGTTTCTGAATTGACATTCCCAAGTAGCACGAAGGTT GTAAATAGATTTATCTTTGCCTTTGCTGAATGCGGGCAGTTTGACAAAGCCATTCTGATATTTGAGCAGATGGAGAATCTGAAATGTAAGCCAGATTTGG TTACGTATAATACTGTTTTGGATCTTTTAGGTCGTGCAGGTCGAATTGATGAAATGCTCGGTGAGTTTGCCTCCATGAAGGAAGCAGGAATTCTCCCAGA TTTTATTTCTTACAATACTTTGCTAAATCAGTTGACCAAAGTAGGAAGATTGGATTTGTGTTCAGTGTATTTCCGAGACATGGTTGGGAATGGAATTGAA CCAGATTTGCTTACATACACTGCATTGATTTGGAGTTTTGGCCAATCCGGAAACATTGAGGAGTCATTGAGACTCTTCAATGAGATGAAAACAAAGCAGA TTCGTCCCTCAATTTATATATATCGATCATTAATTGCTAGTTTGAAGAAGATGGGAAAGATTGAATTGGCAATGACCTTTTTGGAGGAGATGAATGCATC AATGTCAAACCTAGCTGGTCCCAAGGATTTCAAACGAACACACAGATAG
AA sequence Show only first row Show all	>Potri.009G067400.1 pacid=42771091 polypeptide=Potri.009G067400.1.p locus=Potri.009G067400 ID=Potri.009G067400.1.v4.1 annot-version=v4.1 MRNFVNVVARSFFLSSSLLFHLHKVRFFLRKNCITSIPVGSHWILPHFATITEVIGHYKQLTTRASFDGEEIKDDNLNQMLEAVENAPECTTRKVGTAYV HNLCKAGTLFAAVRLLRLLRDKNIFLGPSAYNIILVTASEKNDVEILSQVFKDLILSFQSLPSSLYLKLARGFVKSNDDVQLLRLVKEVSELTFPSSTKV VNRFIFAFAECGQFDKAILIFEQMENLKCKPDLVTYNTVLDLLGRAGRIDEMLGEFASMKEAGILPDFISYNTLLNQLTKVGRLDLCSVYFRDMVGNGIE PDLLTYTALIWSFGQSGNIEESLRLFNEMKTKQIRPSIYIYRSLIASLKKMGKIELAMTFLEEMNASMSNLAGPKDFKRTHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	0	1
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.006G185200 [exp]	1.00	0.8462	UBP23.3
AT4G00090			Transducin/WD40 repeat-like su...		Potri.014G069400 [exp]	1.73	0.8264
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	4.00	0.8318
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	5.29	0.7716
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	8.48	0.7624
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Potri.005G021800 [exp]	10.95	0.7420
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	12.84	0.7407
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	14.45	0.7826
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Potri.006G185300 [exp]	15.00	0.7117
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.005G014100 [exp]	21.21	0.8089

Compare expression of checked genes

Potri.009G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.