Plant FIBer expression Database

Potri.009G067700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12200 863 / 0 PYD2 pyrimidine 2 (.1)
AT4G04955 71 / 8e-13 ATALN allantoinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G273400
[exp]
947 / 0 AT5G12200 857 / 0.0 pyrimidine 2 (.1)
Potri.004G041800
[exp]
71 / 6e-13 AT4G04955 669 / 0.0 allantoinase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026817
[exp]
881 / 0 AT5G12200 882 / 0.0 pyrimidine 2 (.1)
Lus10036064
[exp]
778 / 0 AT5G12200 776 / 0.0 pyrimidine 2 (.1)
Lus10025648
[exp]
77 / 1e-14 AT4G04955 716 / 0.0 allantoinase (.1)
Lus10018186
[exp]
59 / 8e-09 AT4G04955 648 / 0.0 allantoinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF01979 Amidohydro_1 Amidohydrolase family
Representative CDS sequence
>Potri.009G067700.1 pacid=42772595 polypeptide=Potri.009G067700.1.p locus=Potri.009G067700 ID=Potri.009G067700.1.v4.1 annot-version=v4.1
ATGGCTTCTCGTTTCTATCTCTTCTTCTCACTCTCTCTTCTTCTCCTCACTCATTCTCCTTCAAATTCACAATCCAACCAGTTCTGCGAAGCTGGGATTG
GATATGGTGAGGTTGGATGTGGACTTTCATCATCAACGAAGCTGTTGATCAAGGGAGGAACTGTCGTGAATGCACACCACCAAGAGGTTGCTGATGTTTA
CGTAGAGGATGGGATTATTGTTGCTGTCAAGCCTGATCTCAAGGTTACTGATGATGTTAAAGTAATTGATGCCACTGGAAAGTTTGTCATGCCAGGTGGA
ATTGATCCTCACACGCACCTTGCTATGGAGTTTATGGGCACTGAAACTATTGACGACTTTTTCAGTGGTCAGGCAGCGGCATTAGCAGGTGGGACCACAA
TGCATATTGACTTTGTTATACCAGTAAATGGCAGTTTAATAGCAGGTTTAGAAAGCTATGAGGAAAAGGCAAAGAAATCATGCATGGATTATGGTTTTCA
TATGGCAATCACTAAGTTTGATGACAGTGTTTCAAGGGATATGGAAATTATGGTGAAGGAAAAAGGTATCAACTCTTTTAAGTTTTTTCTAGCATACAAG
GGGTCGCTTATGGTCAATGATGAGCTTCTATTAGAAGGACTGAAGCGGTGCAAGTCTCTTGGTGCATTGGCCATGGTCCACGCAGAAAATGGAGATGCTG
TATTTGAAGGACAGAAAAGAATGATACAACTTGGTATTACTGGTCCAGAAGGACATGCTCTTTCAAGGCCCCCATTGCTGGAAGGGGAGGCAACTGCTCG
AGCAATTCGTTTAGCTGGTTTTGTGAACACACCTCTCTATGTAGTTCATGTGATGAGCATTGATGCCATGGAAGAAATAGCCAAAGCTCGAAAATCAGGA
CAGAGAGTTGTAGGTGAGCCAGTGGTTTCCGGATTGGTCCTTGATGATTCAGGACTTTGGGATTCTGACTTTGCCACTGCATCAAAGTTTGTCATGAGCC
CCCCCATAAGAGCAGCAGGACATAACAAAGTCCTGCAAGGTGCCCTTTCAAATGGAGTTCTACAGCTGGTAGGAACTGATCATTGTGTATTTAATTCCAC
ACAAAAAGCCTTCGGGATTGATGATTTCCGTAAAATTCCTAATGGTGTCAATGGTATTGAGGAGAGGATGCATTTGGTTTGGGATACGATGGTGGAATCT
GGCCAAATTTCTATCAATGATTTTGTAAGGGTCACAAGCACTGAATGTGCTAGGGTCTTCAACATATATCCAAGAAAAGGAGCAATTATTGCTGGATCTG
ATGCTGATATAATTATACTCAACCCAAACTCAAGCTTTGAAATAAATGCCCGGTCTCACCACTCTAGAACAGATACAAATGTTTATGAGGGCAGAAGGGG
GAAGGGAAAGGTTGAGGTGACAATTGCTGGAGGACGAGTTGTTTGGGAAAATAATGAACTGAAGGTTGTTCCTGGCTCTGGAAAGTACATAGAAATGCCC
CCTTTCAATTATCTTTTCAGCGGAATTGACAAGGCTGATGCTTCATACCTATCCTCCCTGAATGCTCCAGTAAAACGTTCTAAATCTACAACTTAA
AA sequence
>Potri.009G067700.1 pacid=42772595 polypeptide=Potri.009G067700.1.p locus=Potri.009G067700 ID=Potri.009G067700.1.v4.1 annot-version=v4.1
MASRFYLFFSLSLLLLTHSPSNSQSNQFCEAGIGYGEVGCGLSSSTKLLIKGGTVVNAHHQEVADVYVEDGIIVAVKPDLKVTDDVKVIDATGKFVMPGG
IDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGSLIAGLESYEEKAKKSCMDYGFHMAITKFDDSVSRDMEIMVKEKGINSFKFFLAYK
GSLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSG
QRVVGEPVVSGLVLDDSGLWDSDFATASKFVMSPPIRAAGHNKVLQGALSNGVLQLVGTDHCVFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES
GQISINDFVRVTSTECARVFNIYPRKGAIIAGSDADIIILNPNSSFEINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEMP
PFNYLFSGIDKADASYLSSLNAPVKRSKSTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G12200 PYD2 pyrimidine 2 (.1) Potri.009G067700
[exp]
0 1
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.001G353700
[exp]
4.79 0.8892
Potri.009G149000
[exp]
5.00 0.8805
AT3G17700 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNE... Potri.012G038700
[exp]
6.48 0.8886 Pt-ATCNGC19.3
AT5G64430 Octicosapeptide/Phox/Bem1p fam... Potri.001G285800
[exp]
10.24 0.8716
AT2G12550 NUB1 homolog of human NUB1, ubiquit... Potri.006G061500
[exp]
10.95 0.8575
AT4G14090 UDP-Glycosyltransferase superf... Potri.017G101800
[exp]
11.13 0.8811
AT1G79000 ATHAC1, ATHPCAT... ARABIDOPSIS THALIANA P300/CBP ... Potri.019G036800
[exp]
11.61 0.8812
AT3G50910 unknown protein Potri.005G120600
[exp]
13.19 0.8733
AT1G64385 unknown protein Potri.001G092300
[exp]
14.96 0.8592
AT2G44410 RING/U-box superfamily protein... Potri.001G229600
[exp]
15.32 0.8320

Potri.009G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.