Plant FIBer expression Database

Potri.009G068100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G32560 444 / 1e-155 F-box family protein (.1)
AT2G26850 439 / 5e-154 F-box family protein (.1)
AT2G41170 366 / 5e-125 F-box family protein (.1)
AT3G53000 44 / 8e-05 ATPP2-A15 phloem protein 2-A15 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G273900
[exp]
738 / 0 AT2G26850 440 / 3e-154 F-box family protein (.1)
Potri.006G040000
[exp]
461 / 2e-162 AT2G26850 374 / 1e-128 F-box family protein (.1)
Potri.016G035900
[exp]
456 / 3e-160 AT2G26850 389 / 2e-134 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036061
[exp]
504 / 8e-179 AT2G32560 445 / 3e-156 F-box family protein (.1)
Lus10036444
[exp]
440 / 1e-153 AT2G26850 391 / 9e-135 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.009G068100.1 pacid=42771273 polypeptide=Potri.009G068100.1.p locus=Potri.009G068100 ID=Potri.009G068100.1.v4.1 annot-version=v4.1
ATGCTACTTTACTTCTTCATCACTTGTTTCTCCTTCATCCTATTTTTAAAGCCCCTCCCTCTCAAGCCTTTGCTTCCATGGGCAAGTGAAATAAGATTGC
TGTCAGTCTGGTTCTTGAAGGACTTGTTTCTCTTCTCTTATTTAGGTTCATTGAGGAATACCCTTTTGGAAGTTTTTTATATCAATATAATTCCTTTAAA
AACATCAATTAAGAAGATGAGTCTAAGTTCAAGTGCAAGAGCAGAAAAAAGCGCTCTTGATGATGAGACTGGAGGGATGTCTGTTTTGGACTTGCCTGAA
TTGGCCTTGGAATGTGTTCTTGAGAGGTTACCTCCTGCTGGGCTCTGCAGCATGGCAGGGGTCTGTACTTCTTTGAGGGAAAGGTGTGTGAGTGATCATT
TATGGGAAAAGCATATGAAGCATAAATGGGGCAGGGTTATTGGCCCTGCTGCTTATAGGGAGTGGCAATGGCATTTAGCTTCGAGAAAGGATCTCGGGAG
TTGCAAACAAGGCAAGCCAAAAGGGTTGATGAGGCTTCTGTCTATTTTTTGGCCTTCTTCATGGAGTACACCCAAGGTCGATCCCGTTAACAATAGCAGG
CAGAGGAGTTCTTTGCCTGTTCATTCAATCATGTCCTGGTACCTTGCTCTTGAGACTGGCAAGTTCTGGTTCCCTGCTCAAGTCTTTAACCGTGAGAACG
GGCACGTTGGATTCATGTTATCATGCTATGACGCTGAACTTAACTATGATCCCCGGACGGATACATTTCAAGCGAGGTACCCACCACATGGAAGGAGAGC
AATTTCCATAGAGAGCGGTGTGCCATGGGAAAGGCTTAGAGCGCCATCTGTTGATACCTCTCCACATGATCTACATATCTCTGATTGCTTGCATGATTTA
CTCCCTGGCGATCACATTGAGATTCAGTGGAGAAGAAACAAAGAATTTCCTTATGGTTGGTGGTATGGCGTTGTAGGTCACTTGGAATCATGTGATGGAA
ATGAAAATTATTGTCGGTGTCATAATAGCGACACTGTAGTGTTGGAGTTCCACCAGTACACTCCTGGCTCACGGTGGAGAAGCACTACGGTCAACAGGAA
GGAGCATCGGGAGGAGGGGAATGAGGCAGATGGATTTTATGGAGGGATTAGAAAGCTATATAAGAATGAAGAAATTTCCAGGTGGAAGAGGCTTTGGCCG
ACTGAAGTGTTGGAATAG
AA sequence
>Potri.009G068100.1 pacid=42771273 polypeptide=Potri.009G068100.1.p locus=Potri.009G068100 ID=Potri.009G068100.1.v4.1 annot-version=v4.1
MLLYFFITCFSFILFLKPLPLKPLLPWASEIRLLSVWFLKDLFLFSYLGSLRNTLLEVFYINIIPLKTSIKKMSLSSSARAEKSALDDETGGMSVLDLPE
LALECVLERLPPAGLCSMAGVCTSLRERCVSDHLWEKHMKHKWGRVIGPAAYREWQWHLASRKDLGSCKQGKPKGLMRLLSIFWPSSWSTPKVDPVNNSR
QRSSLPVHSIMSWYLALETGKFWFPAQVFNRENGHVGFMLSCYDAELNYDPRTDTFQARYPPHGRRAISIESGVPWERLRAPSVDTSPHDLHISDCLHDL
LPGDHIEIQWRRNKEFPYGWWYGVVGHLESCDGNENYCRCHNSDTVVLEFHQYTPGSRWRSTTVNRKEHREEGNEADGFYGGIRKLYKNEEISRWKRLWP
TEVLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G32560 F-box family protein (.1) Potri.009G068100
[exp]
0 1
AT5G22355 Cysteine/Histidine-rich C1 dom... Potri.016G057800
[exp]
1.73 0.9417
AT1G79230 STR1, ATRDH1, A... ARABIDOPSIS THALIANA RHODANESE... Potri.005G095300
[exp]
8.48 0.9394 Pt-MST2.1
AT3G16350 MYB Homeodomain-like superfamily p... Potri.003G049100
[exp]
10.39 0.9199
AT3G16560 Protein phosphatase 2C family ... Potri.008G207700
[exp]
15.87 0.9062
Potri.005G112150
[exp]
16.55 0.9414
AT3G11420 Protein of unknown function (D... Potri.010G199900
[exp]
17.32 0.9319
AT3G56010 unknown protein Potri.010G186800
[exp]
20.27 0.9398
AT1G07650 Leucine-rich repeat transmembr... Potri.004G063600
[exp]
24.49 0.9222
AT1G73885 unknown protein Potri.015G053800
[exp]
28.72 0.9391
AT2G18940 Tetratricopeptide repeat (TPR)... Potri.006G166200
[exp]
30.14 0.9330

Potri.009G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.