Plant FIBer expression Database

Potri.009G068300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26840 263 / 4e-88 unknown protein
AT3G43910 120 / 4e-33 unknown protein
AT3G43900 54 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036059
[exp]
302 / 3e-103 AT2G26840 245 / 6e-81 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G068300.2 pacid=42771534 polypeptide=Potri.009G068300.2.p locus=Potri.009G068300 ID=Potri.009G068300.2.v4.1 annot-version=v4.1
ATGGAAACCCTCCAGATTAGACCACAAAACCTGCAATCTCTAAAACCCAAATTCATGAACACACGCTTTTTAAGACTCGTCATCAAACCCTTGAACCCTT
TTTTATCCACCCTAAAACCCTTCTGCACTACAAACTCTTCAACCCCTCTTCCTCTAAAAAAGACCATACTTTCAAGAAACAGAGTAAAGGTTAGGGAAAA
AGTAGCCGATGTTGCCCAACTTAAACAGAATTGGTTAGACTCTCTCACTTTTCCTTTACCTAACGAGACTGAGAATACAAATTTGGGCGGAGATGATTTG
GCCCGGAATAATGTGGGTTCCAATTGGGTTATTGGTGTTGACCCTGATGTTTCCGGTGCTTTGGCACTATTGAAAATCGACGAGTCAGGTTGCTCTGCTC
AGGTGTTTGATTCCCCTCACTTGAAAGTAATGGTTGGAAAAGGAATTCGGAAGCGATTAGATGTTAAGTCTATTGTTCAATTGATTCGTAGTTTTGATGC
TCCGATTGGAACTACTGCATATGTAGAACAATCAACCCCATTCCCACAAGATGGGAAACAGGGATGGTGGAGTGGAGGATTTGGTTATGGATTATGGATA
GGGGTGTTAGTTGCCTCAGGGTTCTCTGTAGTTCCAGTACCATCTATGACATGGAAGAGTGATCTTGAACTTGCTGGAGGCAGGTGTACTAAGGATGATA
GCCGAAGAATCGCATCAACATTATTTCCATCATTGAGTCCCTTGCTAGAAAGGAAAAAAGATCATGGAAGAGCTGAGGCTTTACTCATTGCTGCATATGG
AAAAGGCATGAAGTTGAAGAACTCATCTTCTGTCATAGATGAATTGCCTTAA
AA sequence
>Potri.009G068300.2 pacid=42771534 polypeptide=Potri.009G068300.2.p locus=Potri.009G068300 ID=Potri.009G068300.2.v4.1 annot-version=v4.1
METLQIRPQNLQSLKPKFMNTRFLRLVIKPLNPFLSTLKPFCTTNSSTPLPLKKTILSRNRVKVREKVADVAQLKQNWLDSLTFPLPNETENTNLGGDDL
ARNNVGSNWVIGVDPDVSGALALLKIDESGCSAQVFDSPHLKVMVGKGIRKRLDVKSIVQLIRSFDAPIGTTAYVEQSTPFPQDGKQGWWSGGFGYGLWI
GVLVASGFSVVPVPSMTWKSDLELAGGRCTKDDSRRIASTLFPSLSPLLERKKDHGRAEALLIAAYGKGMKLKNSSSVIDELP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G26840 unknown protein Potri.009G068300
[exp]
0 1
AT5G55510 Mitochondrial import inner mem... Potri.011G088500
[exp]
3.87 0.7895
AT5G01220 SQD2 sulfoquinovosyldiacylglycerol ... Potri.006G097600
[exp]
6.40 0.8234
AT3G47590 alpha/beta-Hydrolases superfam... Potri.018G068000
[exp]
14.49 0.7536
AT5G37360 unknown protein Potri.013G050300
[exp]
18.97 0.7770
AT3G07330 ATCSLC6, ATCSLC... CELLULOSE-SYNTHASE LIKE C6, Ce... Potri.014G190900
[exp]
20.04 0.8052
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
21.63 0.7072
AT2G14880 SWIB/MDM2 domain superfamily p... Potri.009G092200
[exp]
25.92 0.7448
AT1G15390 PDF1A, ATDEF1 peptide deformylase 1A (.1) Potri.001G171800
[exp]
43.81 0.7049 PDF1.2
AT5G10070 RNase L inhibitor protein-rela... Potri.005G080300
[exp]
45.29 0.7090
AT2G37020 Translin family protein (.1.2) Potri.006G126200
[exp]
50.96 0.7044

Potri.009G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.