Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26810 345 / 3e-121 Putative methyltransferase family protein (.1.2.3) AT2G26200 76 / 1e-15 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G08125 71 / 5e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G79915 57 / 2e-09 Putative methyltransferase family protein (.1) AT1G73320 56 / 7e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G35987 49 / 8e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27400 48 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 48 / 3e-06 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT1G63855 45 / 9e-06 Putative methyltransferase family protein (.1.2.3) AT5G01470 44 / 3e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225600 [exp] 73 / 1e-14 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 62 / 3e-11 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 56 / 2e-09 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G006800 [exp] 57 / 3e-09 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.005G109000 [exp] 56 / 3e-09 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.005G039000 [exp] 50 / 5e-07 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G100100 [exp] 48 / 2e-06 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G181200 [exp] 47 / 5e-06 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.017G017000 [exp] 44 / 3e-05 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026822 [exp] 282 / 1e-93 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3) Lus10036057 [exp] 209 / 1e-68 AT2G26810 192 / 5e-62 Putative methyltransferase family protein (.1.2.3) Lus10024993 [exp] 78 / 3e-16 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021425 [exp] 66 / 2e-12 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 64 / 1e-11 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10031516 [exp] 62 / 3e-11 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015166 [exp] 62 / 5e-11 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028415 [exp] 56 / 3e-09 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10041869 [exp] 54 / 2e-08 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10041898 [exp] 48 / 3e-06 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.009G068400.4 pacid=42772005 polypeptide=Potri.009G068400.4.p locus=Potri.009G068400 ID=Potri.009G068400.4.v4.1 annot-version=v4.1 ATGAATAGAGAAGAAAAGGAAGAAGAAGAAGAGATAGTTTGCCTAGACGCGTCTTTCTTCATCAATGACAATTACCGGTTAACCACATTCACATTCGGTT CTCAAGTTATTGAGCTCCTTTGTCTTCACTCTGCTTCAACTGATTTTGATTTGACTGGGCAACTTGTATGGCCCGGTGCCCTGCTTTTGAATGATTATCT TGCAAAAAATGCTGAGATGCTTCAAGGATGTTCTATTATTGAGCTGGGCTCTGGTGTAGGAGTTACTGGAATACTCTGCAGCAGATTTTGCCGTCAACTT CTGTTAACTGACCACAATGATGAAGTGCTTAAGATCCTGAAGAAAAATATAGAGCTCTGTGCATCTTCTGAGAATCCAAATTGTTGTGCTGAGCTTGCGG CTGAGAAGTTAGAGTGGGGAAATTCTGATCATATTGATCAGATTTTACAAAGATATTCAAGGGGATTTGATCTGATTCTTGGAGCTGACATTTGCTTTCA GCAGTCAAGTGTTCCTTTGCTTTTTGATACAGTGGAACGTCTACTTCATGTTCGGGGAGGACAATGCAAATTCATACTGGCTTATGTATCCCGAACTAAG ACCATGGATTCATTGATTATGAAACAAGCTGCTGAGCATGGAATGAGGATGGTTGAGGTTACTGGGACTCGCTCTGTGGTTGGAAATCTTGAAGGAGTCA TATTTGAGGTTGCCCTACAATAA
AA sequence Show only first row Show all	>Potri.009G068400.4 pacid=42772005 polypeptide=Potri.009G068400.4.p locus=Potri.009G068400 ID=Potri.009G068400.4.v4.1 annot-version=v4.1 MNREEKEEEEEIVCLDASFFINDNYRLTTFTFGSQVIELLCLHSASTDFDLTGQLVWPGALLLNDYLAKNAEMLQGCSIIELGSGVGVTGILCSRFCRQL LLTDHNDEVLKILKKNIELCASSENPNCCAELAAEKLEWGNSDHIDQILQRYSRGFDLILGADICFQQSSVPLLFDTVERLLHVRGGQCKFILAYVSRTK TMDSLIMKQAAEHGMRMVEVTGTRSVVGNLEGVIFEVALQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26810			Putative methyltransferase fam...		Potri.009G068400 [exp]	0	1
AT5G48630			Cyclin family protein (.1.2)		Potri.002G246800 [exp]	6.55	0.8058
					Potri.005G011350 [exp]	18.16	0.7975
					Potri.015G073051 [exp]	23.04	0.7892
AT4G05030			Copper transport protein famil...		Potri.006G002000 [exp]	25.21	0.7880
					Potri.007G086250 [exp]	26.19	0.7577
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.002G155400 [exp]	29.32	0.7642
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	31.27	0.7594
AT5G54130			Calcium-binding endonuclease/e...		Potri.012G007600 [exp]	36.74	0.7521
					Potri.006G267450 [exp]	44.66	0.7383
AT2G47710			Adenine nucleotide alpha hydro...		Potri.008G221300 [exp]	48.21	0.7339

Compare expression of checked genes

Potri.009G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.