Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26800 575 / 0 Aldolase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036800 [exp] 432 / 5e-150 AT2G26800 471 / 4e-165 Aldolase superfamily protein (.1.2.3) Potri.001G274004 [exp] 188 / 1e-58 AT2G26800 186 / 2e-58 Aldolase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036056 [exp] 619 / 0 AT2G26800 659 / 0.0 Aldolase superfamily protein (.1.2.3) Lus10026823 [exp] 538 / 0 AT2G26800 605 / 0.0 Aldolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00682 [poplar] [flax] HMGL-like HMGL-like
Representative CDS sequence Show only first row Show all	>Potri.009G068600.1 pacid=42772330 polypeptide=Potri.009G068600.1.p locus=Potri.009G068600 ID=Potri.009G068600.1.v4.1 annot-version=v4.1 ATGTCGAGTCTAGAAGAGCCGCTTGGTTTTGACAAGTTGCCTAGCATGAATACTATTGAGCGAATTCAAAGGTTCTCATCTGGTGCTTGCCGACCCCGGG CTGATGATATTGGAATGGGACATTGCTGGATTGAGGGAAGGATTTGCAGCTCATCCAACAGTTGCGAGGAAGATTATGAGTATACAAGAGAGACTTTTCC TTGGAAAAGACATACAAGAGATCCGTGCCAAGGAAATCGAAGGACTATGAGCTCAGGCAGCAAAAATGTGGTGTCTGGAAGTAGTTGTGATTCACGCTAT TTTCCAGATCATCAATATAGTTCCAAATCCAATGACAAAGACATACGGGATATTACAAATAAGTTCTTGAAAGGTATACCAAAGTTTGTGAAGATTGTGG AAGTTGGTCCAAGAGATGGACTGCAAAATGAGAAAAATATCGTGCCTACAGATGTAAAGGTTGAATTGATTCATAGACTAGTATCTTCTGGGTTGCCAGT TGTTGAGGCCACAAGTTTTGTTTCGCCCAAATGGGTACCTCAGTTAGCAGATGCAAGAGATGTAATGGAAGCAGTTCATGGTTTAGAGGCCTCCAGGTTG CCTGTTCTGACACCTAATTTAAAAGGATTTGAAGCAGCTGTTGCAGCTGGTGCTAAGGAAGTTGCTGTTTTTGCATCAGCTTCTGAGTCATTTTCAAAGT CAAACATCAATTGTAGCATCAAAGAAAGTCTTGCTCGTTATCGTGCTGTAACTCATGCTGCTAAAGAGCTCTCAATTCCTGTTCGTGGGTATGTATCATG TGTTATTGGGTGTCCTGAGGAAGGATCAATACATCCTTCAAAAGTAGCATATGTGGCCAAAGAACTTCATGACATGGGTTGCTTTGAAATATCCCTCGGT GATACAATCGGTGTTGGTACACCTGGGACTGTTGCTCTCATGCTTGAAGCTGTAATGGCTGTTGTTCCCGTTGAGAAGCTTGCTATCCACTTCCATGATA CTTATGGGCAATCTCTTCCCAATATTTTGGTGTCTCTCCAGATGGGGATCAGCGTAGTGGACTCGTCTGTTGCGGGTTTAGGTGGATGCCCATATGCCAA AGGAGCATCAGGCAATGTTGCTACTGAAGATGTTGTCTACATGCTTCATGGGCTTGGCGTGAGAACCAATGTGGATCTGGCGAAACTCCTCTCTGCTGGG GATTTCATTTGCAAGCAATTAGGTCGTCCATCTGGATCAAAGACTGCCGTGGCCTTAAGCCGAGTTACAGCCGATGCCTCTAAGATATAA
AA sequence Show only first row Show all	>Potri.009G068600.1 pacid=42772330 polypeptide=Potri.009G068600.1.p locus=Potri.009G068600 ID=Potri.009G068600.1.v4.1 annot-version=v4.1 MSSLEEPLGFDKLPSMNTIERIQRFSSGACRPRADDIGMGHCWIEGRICSSSNSCEEDYEYTRETFPWKRHTRDPCQGNRRTMSSGSKNVVSGSSCDSRY FPDHQYSSKSNDKDIRDITNKFLKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKVELIHRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVHGLEASRL PVLTPNLKGFEAAVAAGAKEVAVFASASESFSKSNINCSIKESLARYRAVTHAAKELSIPVRGYVSCVIGCPEEGSIHPSKVAYVAKELHDMGCFEISLG DTIGVGTPGTVALMLEAVMAVVPVEKLAIHFHDTYGQSLPNILVSLQMGISVVDSSVAGLGGCPYAKGASGNVATEDVVYMLHGLGVRTNVDLAKLLSAG DFICKQLGRPSGSKTAVALSRVTADASKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	0	1
AT5G17165			unknown protein		Potri.013G081700 [exp]	2.82	0.7167
AT1G36980			unknown protein		Potri.002G089300 [exp]	3.74	0.7421
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	5.47	0.6998
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	9.74	0.6759	UBC.10
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	12.48	0.7016	PtrAAP10
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.014G147700 [exp]	16.88	0.6796	Pt-ATB2.1
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.003G107000 [exp]	18.33	0.6339
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.014G106000 [exp]	20.39	0.5978
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.005G070100 [exp]	26.11	0.6282
AT4G33625			unknown protein		Potri.017G043200 [exp]	28.49	0.6576

Compare expression of checked genes

Potri.009G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.