Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 511 / 3e-178 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 363 / 2e-120 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 359 / 5e-119 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G12320 345 / 2e-113 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT2G45570 340 / 1e-111 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT4G12300 340 / 3e-111 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G06900 335 / 8e-110 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT1G33720 325 / 1e-105 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT1G01280 322 / 1e-104 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT4G31940 321 / 6e-104 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G274600 [exp] 911 / 0 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G073300 [exp] 493 / 3e-171 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 390 / 1e-130 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 389 / 4e-130 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 388 / 4e-130 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084200 [exp] 385 / 2e-129 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084700 [exp] 385 / 3e-129 AT5G07990 397 / 5e-134 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G084800 [exp] 382 / 4e-128 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G167800 [exp] 381 / 1e-127 AT5G07990 353 / 2e-116 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 513 / 3e-179 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10021620 [exp] 468 / 2e-161 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 374 / 1e-124 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10017742 [exp] 369 / 1e-122 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 367 / 8e-122 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 350 / 2e-115 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10028897 [exp] 346 / 9e-114 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 345 / 2e-113 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 343 / 5e-113 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028914 [exp] 341 / 2e-111 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.009G069100.1 pacid=42770770 polypeptide=Potri.009G069100.1.p locus=Potri.009G069100 ID=Potri.009G069100.1.v4.1 annot-version=v4.1 ATGGCCTTAAACATGGTCCTTCTCTGGGAACTCACCATGGCGGCTCTCTTCTTCTTTATTAACTACCTTCTTACTCGCTGTTTGATAAGAAAACTGTCCA CCCGTCAACTGCCTCCAGGCCCCCGAGGGTGGCCGATCATTGGTGCTATTCCCGTCCTAGGAGCCATGCCCCATGCCGCCTTAGCCAAAATGGCCAAACA ATACGGCCCCGTCATGTACTTAAAAATGGGCACTTGTAACATGGTTGTGGCCTCCACCCCAGACGCAGCTCGAGCCTTCCTCAAAACCCTTGATCTAAAT TTCTCAAACCGTCCCCCAAATGCAGGTGCAACTCATTTAGCCTATAATGCACAAGACATGGTCTTTGCAGATTATGGACCAAGGTGGAAATTGTTGCGCA AATTAAGCAACCTACACATGCTAGGTGGTAAGGCTCTAGAGGATTGGGCTCATGTCCGAGTATCCGAGCTAGGGCACATGCTTCGAGCCATGTGCGAGGC TAGCCGAAAAGGCGAACCTGTGGTGGTGCCAGAAATGTTGACCTATGCCATGGCAAATATGATAGGCCAAATTATACTTAGTCGTCGTGTGTTTGTTACT AAAGGTTCAGAGTCTAATGAGTTCAAGGACATGGTAGTGGAGCTCATGACAAGCGCAGGATTATTCAATGTTGGCGATTATATACCGTCGGTTGCTTGGA TGGATTTGCAAGGAATTGAACGTGGGATGAAGAGATTACATCGAAGGTTTGATGTGTTACTGACAAAAATGATGGAGGAGCATATTGCAACGGCTCATGA ACGCAAGGGAAAGCCGGATTTTCTGGACGTTCTCATGGCTAACCAAGAAAATTTGGATGGTGAGAAGCTTAGCTTTACCAACATCAAGGCTCTTCTTTTG AACTTATTCACAGCCGGCACTGACACTTCCTCGAGCATAATCGAATGGTCACTTGCTGAGATGTTGAAAAACCCTCGCATCCTTAAACAAGCTCAGGATG AGATGGATCAAGTCATTGGTCGAAATCGGCGACTAGAGGAATCTGACATACCAAAACTTCCCTACCTGCAAGCCATATGCAAAGAAACATTCCGAAAACA CCCATCTACACCTCTAAACCTACCCAGGATAGCAGACCAAGCATGTGAAGTGAATGGATACTATATCCCCAAAGGCACTAGACTGAGTGTCAACATCTGG GCAATAGGGAGGGATCCTGATGTATGGGACAATCCACTAGACTTTACTCCTGAGAGATTTTTTAGTGAGAAATATGCGAAAATCAACCCTCAAGGAAATG ATTTTGAGCTAATTCCATTTGGAGCTGGAAGAAGAATTTGTGCTGGGACTAGAATGGGGATTGTGCTAGTACAGTACATTTTAGGCACATTGGTACACTC TTTTGATTGGAAATTGCCAAAAGATGTTGAGCTCAACATGGATGAGGTCTTTGGTCTTGCATTGCAGAAGGCAGTTCCCCTTTCCGCCATGGTTACTCCA CGCCTGGAACCTAACGCATATCTTGCTTAA
AA sequence Show only first row Show all	>Potri.009G069100.1 pacid=42770770 polypeptide=Potri.009G069100.1.p locus=Potri.009G069100 ID=Potri.009G069100.1.v4.1 annot-version=v4.1 MALNMVLLWELTMAALFFFINYLLTRCLIRKLSTRQLPPGPRGWPIIGAIPVLGAMPHAALAKMAKQYGPVMYLKMGTCNMVVASTPDAARAFLKTLDLN FSNRPPNAGATHLAYNAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWAHVRVSELGHMLRAMCEASRKGEPVVVPEMLTYAMANMIGQIILSRRVFVT KGSESNEFKDMVVELMTSAGLFNVGDYIPSVAWMDLQGIERGMKRLHRRFDVLLTKMMEEHIATAHERKGKPDFLDVLMANQENLDGEKLSFTNIKALLL NLFTAGTDTSSSIIEWSLAEMLKNPRILKQAQDEMDQVIGRNRRLEESDIPKLPYLQAICKETFRKHPSTPLNLPRIADQACEVNGYYIPKGTRLSVNIW AIGRDPDVWDNPLDFTPERFFSEKYAKINPQGNDFELIPFGAGRRICAGTRMGIVLVQYILGTLVHSFDWKLPKDVELNMDEVFGLALQKAVPLSAMVTP RLEPNAYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.009G069100 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.018G036700 [exp]	3.16	0.9406
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	4.12	0.9487
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Potri.017G082500 [exp]	5.47	0.9256	Pt-MYB94.1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111600 [exp]	8.66	0.9298
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111751 [exp]	14.49	0.9092
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	18.02	0.8989	Pt-LACS2.2
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.006G177500 [exp]	21.00	0.9220
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.017G155300 [exp]	25.09	0.9334
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	25.29	0.9195
					Potri.004G050700 [exp]	25.29	0.9050

Compare expression of checked genes

Potri.009G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.