Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19370 281 / 2e-94 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) AT1G26550 48 / 9e-07 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G55130 48 / 6e-06 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT5G66170 42 / 6e-05 STR18 sulfurtransferase 18 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355800 [exp] 53 / 1e-07 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.008G089900 [exp] 45 / 7e-06 AT1G26550 214 / 1e-72 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G014900 [exp] 44 / 3e-05 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026105 [exp] 277 / 3e-93 AT5G19370 233 / 8e-76 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Lus10000413 [exp] 276 / 1e-91 AT5G19370 240 / 1e-77 rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein (.1) Lus10000697 [exp] 54 / 7e-08 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 52 / 2e-07 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10019084 [exp] 49 / 4e-07 AT1G26550 225 / 4e-77 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10015714 [exp] 49 / 5e-07 AT1G26550 224 / 1e-76 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10005635 [exp] 43 / 8e-05 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10012566 [exp] 40 / 0.0005 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00581 [poplar] [flax] Rhodanese Rhodanese-like domain CL0487 [poplar] [flax] FKBP PF13616 [poplar] [flax] Rotamase_3 PPIC-type PPIASE domain
Representative CDS sequence Show only first row Show all	>Potri.009G069300.1 pacid=42771127 polypeptide=Potri.009G069300.1.p locus=Potri.009G069300 ID=Potri.009G069300.1.v4.1 annot-version=v4.1 ATGTTAAGAGCATCTCACATCCCACCAGTAGCAACACCAGCACTCTCTGCTCTCAAAATCTCTCTGATTCCCGCCCTCTCACTCTCTTCTTCACTTCCTC ACCTTTACAAACTCTCTACATTTGCTCCACTTCATAATTTCCTTCCAAAAACAGCACCACCCAATTCATCTCCTATCTCCTTCAAAAGGTTCTTACCAAT GTTGGGTCACCACCCTTGTCCCAAAGCTTCGTTTAGTTCTGGGAGCGGCACTGGAGGTGGAAGAGAGTTATTGGTGCAGCACTTGCTTGTTAAAGAAGAT GACCTCAAGCTTTTGTTGGAGCTTCAACAGAGAATTTCAGGAGGAGGAGAGGATTTGAGTGACCTTGCAGTGGAATACTCATTATGTCCATCAAAAGAAG AAGGGGGGATGCTTGGCTGGGTTAGAAAAGGGCAAATGGTACCAGAATTTGAGGAAGCTGCTTTTAGTGCCCCTTTGAACAAAGTTGTAAGGTGTAAAAC TAAATTTGGGTGGCATTTGTTGCAAGTTATTTCTGAGAGGGAAGAATCTCTACTTGGGGAAATTCAAGCGGATGAGCTCCATGTAAAAATCCAAGATCCT ACATTTGCCAAAGAAGCTCAATTGATTGATGTTCGAGAACCTGATGAAGTGGCCAAAGCTTCATTGCCAGGTTTTGAAGTACTTCCCCTCCGCCAGTTTG GAAGCTGGGGACCAGAAGTTACAACCAAGTTTGATCCTGAAAAGGATACTTATGTTATGTGTCACCATGGGATGCGGTCACTACAGGTTGCTAAGTGGTT GCAGTCTCAGGGTTTCAAGAGAGTATTTAATGTGTCCGGGGGCATACATGCATACGCTGTCAGGGTCGATCCATCAATTCCTACGTACTGA
AA sequence Show only first row Show all	>Potri.009G069300.1 pacid=42771127 polypeptide=Potri.009G069300.1.p locus=Potri.009G069300 ID=Potri.009G069300.1.v4.1 annot-version=v4.1 MLRASHIPPVATPALSALKISLIPALSLSSSLPHLYKLSTFAPLHNFLPKTAPPNSSPISFKRFLPMLGHHPCPKASFSSGSGTGGGRELLVQHLLVKED DLKLLLELQQRISGGGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMVPEFEEAAFSAPLNKVVRCKTKFGWHLLQVISEREESLLGEIQADELHVKIQDP TFAKEAQLIDVREPDEVAKASLPGFEVLPLRQFGSWGPEVTTKFDPEKDTYVMCHHGMRSLQVAKWLQSQGFKRVFNVSGGIHAYAVRVDPSIPTY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19370			rhodanese-like domain-containi...		Potri.009G069300 [exp]	0	1
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.013G046200 [exp]	2.23	0.9375
AT5G07900			Mitochondrial transcription te...		Potri.004G013000 [exp]	3.46	0.9204
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.002G195200 [exp]	8.06	0.9213	CLPP5.2
AT5G59500			protein C-terminal S-isoprenyl...		Potri.001G242400 [exp]	8.12	0.9136
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190900 [exp]	13.11	0.8815
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.001G060200 [exp]	13.52	0.9249
AT3G21200		PGR7	proton gradient regulation 7 (...		Potri.010G250200 [exp]	14.42	0.9259
AT2G26340			unknown protein		Potri.006G220800 [exp]	15.62	0.9217
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Potri.012G093800 [exp]	19.49	0.9150
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	22.36	0.8475

Compare expression of checked genes

Potri.009G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.