Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19380 422 / 4e-145 CLT1 CRT (chloroquine-resistance transporter)-like transporter 1 (.1), CRT (chloroquine-resistance transporter)-like transporter 1 (.2) AT5G12170 421 / 1e-144 CLT3 CRT (chloroquine-resistance transporter)-like transporter 3 (.2) AT4G24460 290 / 4e-94 CLT2 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000891 [exp] 322 / 5e-105 AT5G12170 364 / 1e-120 CRT (chloroquine-resistance transporter)-like transporter 3 (.2) Lus10028858 [exp] 283 / 8e-93 AT4G24460 326 / 5e-110 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2) Lus10008964 [exp] 256 / 5e-80 AT4G24460 291 / 8e-94 CRT (chloroquine-resistance transporter)-like transporter 2 (.1), CRT (chloroquine-resistance transporter)-like transporter 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08627 [poplar] [flax] CRT-like CRT-like, chloroquine-resistance transporter-like
Representative CDS sequence Show only first row Show all	>Potri.009G069400.6 pacid=42771608 polypeptide=Potri.009G069400.6.p locus=Potri.009G069400 ID=Potri.009G069400.6.v4.1 annot-version=v4.1 ATGACGTCATGTTTCCGGCGGTTAACAACGGGGCCCACGCCACCAAGCGGACCGGCACAATCAAGGCAACGAAGTACGGCAGATATTCTCTCTCTACCTC TAAAACGAATTTCCATAAACCAACAGCCAGGAATTCTCCTGAGATCATCAAGGCAGCACTCCAGATCATTCATAATCGAGGCAGTTGAACCAGGGGACCG ATCGGGGGGTGGAAATGAAGCTGAAAAGGCGGGGCCATGCGCGTGCTTGGTGGGAGATCAGACGGTGGGAGGCGTGGTAGAGAGTATAGATCGGACGGTT GAGATTAATGGAAAGAGGACAATAAGCGGGAGTGATAGCAGGAGCAAGGAGGACCGAGCGGTAGAGGTGGCGGTTGCAGCGGCGGTTACGGTAGTGTTGG GGGTAGGGAATCGGGTGCTGTATAAGCTGGCTCTACTTCCTCTCAAGCATTACCCCTTCTTTCTAGCTCAGCTCGCTACTTTCGGATATGTTATTGTATA CTTCACCATCTTGCATATTCGGCACCGTGCTGGCATCGTTACAGATGAGATGCTTTCTATGCCAAAAGCTCCGTATATTCTTGTTGGACTCTTAGAAGCT CTTGGAGCTGCAACTGGAATGGCAGCTGGAGCAATTCTTTCTGGAGCATCAATTCCAATTTTGTCTCAGACCTTTCTTGTATGGCAGATTCTCTTGTCCA CTATTTTTCTTGGAAGGAGATATAAAGTCAACCAGTTGCTTGGATGCTTCTTAGTTGCTGTTGGTGTAATAATAACCGTGGCAAGCGGACCGAGTGCTGG TTCGTTAAGGGAAGCTGGTATATTCTGGAGTCTTTTGATGATGTTCTCTTTTTTCTTACAAGCCGCAGATACAGTGCTCAAGGAAGTCATTTTCTCGGAT GCTGCTAAGCAGTTAAAGGGGGGTTCTGTAGATCTATTTGTAATAAACTCCTATGGATCTGCTTTCCAAGCACTGTTTGTATGCCTTCTTCTACCATTTA TGTCGAAATTATGGGGTATACCATTTAGTCAGCTTCCAAACTATCTTAAAGATGGGGCAGTTTGCTTTCTAAACATTGGCAGTTTATCGAGTGGATGTGA TGGTGCACCTCTGCTTCCTTTGTTGTTTGTGATTGTCAACATGGGGTTTAACATCTCATTACTGCATCTCCTCAAGATCTCTTCTGCTGTTGTGTCTTCC CTTGCTTCCACATTTTCTGTACCAATAGCTGTGTATGTGTTCACACTGCCATTGCCATATCTTGGAGTCGCATCCTCCCTTCCAACTGGCTTTGTAGCAG GAGCCATCGTCCTTGTTTTGGGGTTGCTCATCTATGCCTGGACACCATCCAGGTAG
AA sequence Show only first row Show all	>Potri.009G069400.6 pacid=42771608 polypeptide=Potri.009G069400.6.p locus=Potri.009G069400 ID=Potri.009G069400.6.v4.1 annot-version=v4.1 MTSCFRRLTTGPTPPSGPAQSRQRSTADILSLPLKRISINQQPGILLRSSRQHSRSFIIEAVEPGDRSGGGNEAEKAGPCACLVGDQTVGGVVESIDRTV EINGKRTISGSDSRSKEDRAVEVAVAAAVTVVLGVGNRVLYKLALLPLKHYPFFLAQLATFGYVIVYFTILHIRHRAGIVTDEMLSMPKAPYILVGLLEA LGAATGMAAGAILSGASIPILSQTFLVWQILLSTIFLGRRYKVNQLLGCFLVAVGVIITVASGPSAGSLREAGIFWSLLMMFSFFLQAADTVLKEVIFSD AAKQLKGGSVDLFVINSYGSAFQALFVCLLLPFMSKLWGIPFSQLPNYLKDGAVCFLNIGSLSSGCDGAPLLPLLFVIVNMGFNISLLHLLKISSAVVSS LASTFSVPIAVYVFTLPLPYLGVASSLPTGFVAGAIVLVLGLLIYAWTPSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	0	1
AT5G15870			glycosyl hydrolase family 81 p...		Potri.004G105300 [exp]	1.00	0.8618
AT5G17380			Thiamine pyrophosphate depende...		Potri.004G094600 [exp]	2.82	0.8007
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	4.47	0.8457	Pt-PK1.1
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.003G148400 [exp]	5.47	0.7965
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	12.24	0.7442
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G442200 [exp]	14.49	0.7885
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.008G046100 [exp]	17.49	0.7571
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.017G108800 [exp]	18.65	0.7233	SAMDC.4
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.018G092100 [exp]	18.76	0.7581	PSC450.1
AT1G32740			SBP (S-ribonuclease binding pr...		Potri.003G085800 [exp]	20.66	0.7859

Compare expression of checked genes

Potri.009G069400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.