Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28010 660 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 345 / 2e-109 RPF2 rna processing factor 2 (.1) AT1G62930 343 / 2e-108 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 339 / 5e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 336 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 336 / 1e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 327 / 5e-102 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G62910 325 / 2e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 323 / 3e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 321 / 4e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 372 / 6e-119 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 335 / 5e-106 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 337 / 2e-105 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 331 / 4e-104 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 330 / 1e-103 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 332 / 3e-103 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G236800 [exp] 333 / 5e-102 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 324 / 2e-101 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 320 / 2e-100 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017684 [exp] 790 / 0 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 324 / 8e-100 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 323 / 2e-99 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 323 / 9e-99 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 323 / 1e-97 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 310 / 8e-95 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 309 / 1e-94 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 305 / 2e-91 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029737 [exp] 296 / 8e-90 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012139 [exp] 301 / 9e-90 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G069600.1 pacid=42771195 polypeptide=Potri.009G069600.1.p locus=Potri.009G069600 ID=Potri.009G069600.1.v4.1 annot-version=v4.1 ATGAAAAGATCAGTGTATTCACACACAAAAAGCTGTTTTGCCTTTCCAAATTACTTTCTTCACCCCAAGCTATCCTCTTCAGTTTCCGATGTAGAAGCCC AGTTGAGAAGTCTTTGTGCCAAACCCGATAACTTTCATCTAAATGAGGCAGTTTCTCTGTTTCACAAAGCAGTCAACTCAAGCCCATTGCTTTCTCAGTC AGCTTGCAATTCTCTGATGGAATCCCTGGTAAAGTCCAAACACTATGAACTGGCCTTTTCTGTTTATAGTAGAATGACTCATGTGGGGGTTTTGCCAAGT TTTATATCATTGGGTGGTTTAATTGATAGTTTTGTGTTTGCCAAGAAGCCCCAGTTAGCTTCAGGGGTGTTGGGGTTGATATTTAAGCGTGGTTTTATTG TTGGAGTGTATAATATTAATGTAATATTGAAGGGTTTGTGTAGAAATAAAGAGGTTTACGGAGCATTGGATTTGTTTAATAGAATGAAAAGGACTAATAT TTTGCCTGATATTGTTAGTTATAATACGATTATAAACGGACTTTGTAAGGAGAAAAGATTGGAAAAGGCTGTCGACTTGTTAGTTGAAATGGAGGGGTCA AATTGTGAACCGAATTCCTTTACTTATTGTATTTTGATGGATGGTCTTTGTAAGGAGGGTAGAGTAGAGGAGGCAATGCGTTTGTTGGGGGAGATGAAGA GAAAGGGATTGGAGGTGGATGTCGTTGTTTATTCTACGCTTATAAGTGGTTTCTGTAGTAAAGGATGTTTAGATAGAGGGAAGGCATTGTTCGATGAGAT GTTGGAAAAGGGTATTTCTCCAAATGTAGTTGTTTATAGTTGTTTGATAAATGGTTTTTGTAAGAAGGGGCTATGGAGAGAAGCCACTGCTGTGTTACAT ACTATGACCGAAAGGGGGATTCAGCCTGATGTTTATACTTATACGTGTATGATTGGTGGGCTTTGTAAGGATGGGAGGGCTAGGAAGGCTTTGGATTTGT TTGATTTAATGACAGAAAAAGGTGAAGAGCCTAGTACCGTGACATATAATGTTCTAATCAATGGACTATGCAAGGAAGGCTGCATTGGAGATGCTTTTAA AATCTTTGAAACAATGTTGGAGAAGGGGAAGCGACTGGAGGTGGTTTCTTACAATACCCTAATAATGGGACTTTGCAATAATGGAAAGCTTGACGAGGCA ATGAAACTTTTTAGTTCACTCTTGGAGGATGGGAATTATGTTGAGCCAGATGTAATCACATTCAACACTGTGATTCAAGGGCTGTGCAAGGAAGGACGTC TTGACAAGGCTGTGGAGATTTATGATACAATGATTGAGAGGGGGAGCTTCGGTAATCTGTTTACTTGTCATATTTTAATTGGAGAATATATAAAATCAGG GATTATTGACAAGGCCATGGAACTTTGGAAACGTGTACACAAATTGGGGCTTGTTCCGAGTTCAACCACTTACAGTGTCATGATTGATGGATTTTGTAAA ATGCACATGCTTAATTTTGCAAAAGGACTATTTAGTAGAATGAAAATTTCTGGGCTTAGCCCTACATTGTTTGATTACAATACATTGATGGCATCCTTGT GCAAGGAGAGTAGCTTGGAGCAAGCGAGAAGATTGTTTCAAGAAATGAAGGAATCAAACTGTGAACCTGATACCATTTCTTTCAATATAATGATTGATGG GACTCTGAAAGCAGGGGATATTCACTCTGCCAAAGAATTACTCAACGACATGCAACAGATGGGTCTGACTCCAGATGCTTATACTTATTCCTCATTTATA AACAGGTTGTCAAAACTTGGACAAATGGAAGAGGCAAAAGGTGCTTTTGACAGCATGATTGCCTCTGGCATTACACCAGACAACCATGTATATGATTCCT TAATAAAAGGCTTTGGTTTGAATGATGAGATAGAAGAAGTCATAAACCTCCTTCGTCAAATGGCAGATATGGGTGTCATTCTTGACATAGAAATAACCAA TTCCATCCTGACATTTCTCTGTAATAGCGCAGAGCATCTTCATGTGATGGAGCTTTTGCCTAATTTTTCCTCAGAAAGCTCAGGAGGGACAAGCATCTCT TGTGACGAGTTATTGATGAAAATACAAAAGTTTAACCCAAAACTCCAAATATCCGCTGCTTGA
AA sequence Show only first row Show all	>Potri.009G069600.1 pacid=42771195 polypeptide=Potri.009G069600.1.p locus=Potri.009G069600 ID=Potri.009G069600.1.v4.1 annot-version=v4.1 MKRSVYSHTKSCFAFPNYFLHPKLSSSVSDVEAQLRSLCAKPDNFHLNEAVSLFHKAVNSSPLLSQSACNSLMESLVKSKHYELAFSVYSRMTHVGVLPS FISLGGLIDSFVFAKKPQLASGVLGLIFKRGFIVGVYNINVILKGLCRNKEVYGALDLFNRMKRTNILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGS NCEPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLH TMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEA MKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCK MHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFI NRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDIEITNSILTFLCNSAEHLHVMELLPNFSSESSGGTSIS CDELLMKIQKFNPKLQISAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28010			Tetratricopeptide repeat (TPR)...		Potri.009G069600 [exp]	0	1
AT4G15820			unknown protein		Potri.008G222000 [exp]	7.61	0.8620
AT5G08520	MYB		Duplicated homeodomain-like su...		Potri.005G087700 [exp]	8.24	0.8359
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	10.00	0.7987
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	16.06	0.8382
AT2G28600			P-loop containing nucleoside t...		Potri.010G234000 [exp]	23.23	0.7771
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.017G126600 [exp]	28.46	0.8132
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	29.91	0.8248
AT3G13990			Kinase-related protein of unkn...		Potri.001G170700 [exp]	31.46	0.8093
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	35.49	0.8246
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	35.98	0.8225

Compare expression of checked genes

Potri.009G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.