Plant FIBer expression Database

Potri.009G070000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13500 515 / 0 unknown protein
AT2G25260 437 / 4e-154 unknown protein
AT5G25265 437 / 1e-153 unknown protein
AT3G01720 59 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G275600
[exp]
664 / 0 AT5G13500 543 / 0.0 unknown protein
Potri.001G028100
[exp]
531 / 0 AT5G13500 570 / 0.0 unknown protein
Potri.003G195600
[exp]
507 / 0 AT5G13500 532 / 0.0 unknown protein
Potri.006G258800
[exp]
449 / 2e-158 AT5G25265 577 / 0.0 unknown protein
Potri.018G023100
[exp]
444 / 9e-157 AT5G25265 583 / 0.0 unknown protein
Potri.001G336400
[exp]
63 / 2e-10 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036037
[exp]
599 / 0 AT5G13500 542 / 0.0 unknown protein
Lus10009691
[exp]
596 / 0 AT5G13500 541 / 0.0 unknown protein
Lus10041028
[exp]
442 / 1e-155 AT5G25265 618 / 0.0 unknown protein
Lus10005347
[exp]
441 / 3e-155 AT5G25265 612 / 0.0 unknown protein
Lus10022320
[exp]
57 / 1e-08 AT3G01720 1181 / 0.0 unknown protein
Lus10014878
[exp]
57 / 1e-08 AT3G01720 1197 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G070000.1 pacid=42772099 polypeptide=Potri.009G070000.1.p locus=Potri.009G070000 ID=Potri.009G070000.1.v4.1 annot-version=v4.1
ATGATTGGAAGAAAAAATATGGGGCGAGCGTCGCCATTGCTATTGGTGCTTTTGGCACTAGGGTTTTTCTTTGCCACGTATAACTTGTTGACTTTGATAA
TACAGTATAAGGATTCTAGTACAGGACTTGGATCAGGGATTTCTGATCCTGTTACAGGGATGCCAGCCAATTCTTGGAAATTAGGGAAGTCAAATTTGAA
ATTCCATGTTGCTCTTACGGCTACTGATGCTCCTTATAGTCAATGGCAATGCCGGGTTATGTATTATTGGTATAAGAAAATGAAAAGCATGCCAGGATCA
GACATGGGAAAGTTCACTCGAGTTTTGCATTCGGGGAAAGGTGATCATTTGATGGATGAGATTCCAACTTTTATTGTTGATCCTCTTCCAGACGGCCTAG
ATCGGGGATATATTGTCTTGAATAGACCATGGGCTTTTGTGCAATGGCTGGAAAAGGCAACAATTGAGGAAGACTACATTCTAATGGCAGAGCCTGACCA
CATATTCGCAAATCCTTTGCCTAACTTGGCACATGGAGATAATCCAGCAGGGTTTCCATTTTTCTATATTAAACCAACTGAACATGAGAAAATTGTTAGA
AAGTTTTATCCTGAGGAGAAGGGTCCTGTGACAGATGTTGATCCAATTGGCAATTCCCCTGTAATAATAAAAAAGTCCCTGCTGGAGGAAATTTCGCCAA
CATGGGTGAATGTTTCGTTAAGAATGAAAGATGACCCGGAGACTGATAAGGCATTTGGTTGGGTGCTAGAGATGTATGCCTATGCTGTAGCATCAGCATT
GCATGGTGTACGGCATATACTTCGTAAAGACTTTATGCTACAGCCTCCATGGGATTTGGAAGTTGGTAAGAGATTTATCATCCACTATACTTATGGATGC
GACTATAATATGAAGGGAGAATTAACATATGGAAAGATTGGAGAATGGCGGTTTGACAAGAGATCCTATCTCAGTGGTCCTCCACCAAAGAACCTCACCC
TGCCCCCACCAGGAGTTCCTGAAAGCGTGGTGAGACTTGTAAAGATGGTGAATGAGGCTACAGCTAACATTCCAGGCTGGGACTCATTGAACAGTGGCTG
A
AA sequence
>Potri.009G070000.1 pacid=42772099 polypeptide=Potri.009G070000.1.p locus=Potri.009G070000 ID=Potri.009G070000.1.v4.1 annot-version=v4.1
MIGRKNMGRASPLLLVLLALGFFFATYNLLTLIIQYKDSSTGLGSGISDPVTGMPANSWKLGKSNLKFHVALTATDAPYSQWQCRVMYYWYKKMKSMPGS
DMGKFTRVLHSGKGDHLMDEIPTFIVDPLPDGLDRGYIVLNRPWAFVQWLEKATIEEDYILMAEPDHIFANPLPNLAHGDNPAGFPFFYIKPTEHEKIVR
KFYPEEKGPVTDVDPIGNSPVIIKKSLLEEISPTWVNVSLRMKDDPETDKAFGWVLEMYAYAVASALHGVRHILRKDFMLQPPWDLEVGKRFIIHYTYGC
DYNMKGELTYGKIGEWRFDKRSYLSGPPPKNLTLPPPGVPESVVRLVKMVNEATANIPGWDSLNSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13500 unknown protein Potri.009G070000
[exp]
0 1
AT3G44260 AtCAF1a CCR4- associated factor 1a, Po... Potri.016G073000
[exp]
1.00 0.7332
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.005G146700
[exp]
13.78 0.6867 Pt-XF1.2
AT1G72280 AERO1 endoplasmic reticulum oxidored... Potri.001G436100
[exp]
17.49 0.6259 Pt-AERO1.1
AT5G56170 LLG1 LORELEI-LIKE-GPI-ANCHORED PROT... Potri.001G471500
[exp]
20.34 0.6092
AT5G54830 DOMON domain-containing protei... Potri.006G262300
[exp]
20.49 0.6490
AT3G16770 AP2_ERF RAP2.03, ATEBP,... RELATED TO AP2 3, ETHYLENE RES... Potri.002G201600
[exp]
20.63 0.6526
AT1G58290 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, G... Potri.001G286400
[exp]
20.63 0.6392
AT5G39890 Protein of unknown function (D... Potri.017G079400
[exp]
24.89 0.6059
AT4G34880 Amidase family protein (.1) Potri.009G130700
[exp]
28.01 0.6452
AT5G47780 GAUT4 galacturonosyltransferase 4 (.... Potri.006G001100
[exp]
33.70 0.6356

Potri.009G070000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.