Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19410 707 / 0 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 456 / 1e-153 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 453 / 1e-152 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 438 / 9e-147 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 433 / 7e-144 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55100 310 / 2e-96 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT3G55090 310 / 2e-95 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 307 / 2e-94 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 298 / 3e-91 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G53510 296 / 2e-90 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027600 [exp] 473 / 8e-160 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 462 / 3e-155 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 461 / 1e-154 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 453 / 3e-152 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 453 / 3e-152 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 451 / 3e-151 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 308 / 4e-95 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 308 / 9e-95 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 305 / 8e-94 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000737 [exp] 754 / 0 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 734 / 0 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 728 / 0 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 718 / 0 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 453 / 4e-152 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 402 / 8e-132 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 390 / 4e-127 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 293 / 2e-93 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 303 / 2e-92 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 251 / 9e-74 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.009G070100.1 pacid=42772526 polypeptide=Potri.009G070100.1.p locus=Potri.009G070100 ID=Potri.009G070100.1.v4.1 annot-version=v4.1 ATGGCATCTTGTTTCCAGCAACCAAGTGTTGAGGAAGACTCGGTGATATTCTTCTCAACTTCTAATTCCCCAGAGGAATACTCCACCAGCCCCTCCTCTT CTTTCAATCCCTCACCACCGCCACAACCTCATCAACATTCACGAATATATTTTAAACTTTCTGTAAGAAATCTTTCCTATACCATCTGTCCTAACAGGCC AGTATGCACTTCATTTTCTCACTTGATGCAAAAGCCTAAGCCCATCAACATACTTAAATCAGTTTCTTTTGATGCGAGAGGCTCTGAAATTCTAGCCGTT GTTGGTCCAAGTGGCACCGGAAAATCAAGTCTTCTTCGGATCATATCAGGCAGAGTCAAAGATAAGGATTTTGATCCAAAGAGCGTGTTAATAAATGGTC GCTGCATGGCTAGTACAGCTCAGTTGAGGAAGATATGTGGATTTGTCACACAGGAGGATAATTTGCTTCCTTTACTGACCGTGAAGGAAACACTTATGTT CAGTGCCAAGTTCAGGCTCAAAGAAAAGAGTTCAAAAGAGAGAGAAGAGAGGGTGGAGAGCTTGATGCGTGAGCTTGGCCTTTTCCATGTTGCAAATAGT TTTGTTGGTGATGAAGAGAATAGAGGGATATCCGGTGGAGAAAGAAAGAGGGTGTCAATTGGGGTTGACATGATTCATGATCCACCAATTCTACTCCTTG ATGAACCAACTTCAGGCCTAGACAGCACTTCAGCACTTCAAGTGATCGAGCTGCTTTCATCAATGGCAAAAGCAAAGCAAAGGACAGTGGTGTTATCTAT CCATCAACCAAGCTATCGAATTCTTCAGTACATTCCCAATTTCTTAATCCTGTCTCGTGGTTCGGTTGTGCATAATGGCAGCCTGGAATCACTTGAGGAA ACCATAACCAAGTTGGGATTCCAAATTCCATTGCAGTTGAATGCTCTGGAGTTTGCAATGGAAATTATCAATACATTAGAAGATGCAAAATCCAAAATGT ACATGCCTGCTCTAGAAAATGAACCATATTCCAACTCAATTTGGCCCCAAGAAGAAATTGTCCAAATCCAACAAGGTTCTGATACCAAATACTCAGGCTT TTGTTCCTTCTTCAATTTGTCTGAAATTATATTTCTCTGCTCAAGATTTTGGAAGGTCATTTATAGAACAAAGCAGCTATTCTTGGCAAGAACAATGCAA GCCATTGTTGGAGGCTTTGGGTTAGCCAGTGTATATATCAAGGTGAGGAAGGATGAAGGAGGGGTTGCTGAACGATTAGGCCTATTTGCTTTCAGTCTTA GTTTTCTCCTTTCTTCAACAGTGGAAGCTCTTCCAATATACCTTCAGGAGCGGCGTGTTCTGATGAAGGAATCTTCAAGAGGAGCCTATAATATCTCCTC CTACATGATTGCCAACACCATTGTCTTTCTGCCTTTCTTGTTTGCTGTGGCTATGCTTTTCTCCATCCCTGTGTACTGGATTGTGGGACTTAATCCTTCC ATCGCTGCCTTTGCATTCTTCGTATTTGTGGTCTGGCTTATTGTCCTGATGGCTAGTTCTCTAGTGCTTTTCCTAAGTGCAGTCTCCCCTGACTTCATTT CAGGAAATTCTCTCATCTGCACAGTGCTTGGAGCATTCTTTCTCTTCTCTGGATACTTCATTCCGAAAGAGAACATCCCCAAATATTGGCTGTTCATGTA CTATGTTTCCCTCTACAGGTATCCATTGGATTCGCTGCTTACAAATGAGTATTGGAGTGTGAGAAATGAGTGTTTCTCTTGGCAGGGTCAGGATCATTCC ACGTGTGTGCTTACAGGAAATGATGTCTTGAAGAGTAGAGGACTTGACAAGGATACTAGGTGGATAAATGTGGGAATCATGTTTGGTTTCTTTGTTTTCT ATCGCGTGCTTTGTTGGATAATTCTTGCTAGAAGGGCTTCAAAAACAACAATATGA
AA sequence Show only first row Show all	>Potri.009G070100.1 pacid=42772526 polypeptide=Potri.009G070100.1.p locus=Potri.009G070100 ID=Potri.009G070100.1.v4.1 annot-version=v4.1 MASCFQQPSVEEDSVIFFSTSNSPEEYSTSPSSSFNPSPPPQPHQHSRIYFKLSVRNLSYTICPNRPVCTSFSHLMQKPKPINILKSVSFDARGSEILAV VGPSGTGKSSLLRIISGRVKDKDFDPKSVLINGRCMASTAQLRKICGFVTQEDNLLPLLTVKETLMFSAKFRLKEKSSKEREERVESLMRELGLFHVANS FVGDEENRGISGGERKRVSIGVDMIHDPPILLLDEPTSGLDSTSALQVIELLSSMAKAKQRTVVLSIHQPSYRILQYIPNFLILSRGSVVHNGSLESLEE TITKLGFQIPLQLNALEFAMEIINTLEDAKSKMYMPALENEPYSNSIWPQEEIVQIQQGSDTKYSGFCSFFNLSEIIFLCSRFWKVIYRTKQLFLARTMQ AIVGGFGLASVYIKVRKDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKESSRGAYNISSYMIANTIVFLPFLFAVAMLFSIPVYWIVGLNPS IAAFAFFVFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKENIPKYWLFMYYVSLYRYPLDSLLTNEYWSVRNECFSWQGQDHS TCVLTGNDVLKSRGLDKDTRWINVGIMFGFFVFYRVLCWIILARRASKTTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Potri.009G070100 [exp]	0	1
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	5.38	0.9371	3
AT1G70140		ATFH8	formin 8 (.1)		Potri.010G037900 [exp]	8.12	0.9064
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	9.59	0.9358
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.015G046800 [exp]	11.13	0.9348
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	12.12	0.9355
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	12.24	0.9345	CYP86A19,Pt-CYP86.4
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	13.49	0.9330
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	15.29	0.9339
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.007G036300 [exp]	15.55	0.9262
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.001G326300 [exp]	15.74	0.9325

Compare expression of checked genes

Potri.009G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.