Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12300 284 / 1e-92 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G55530 217 / 4e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G50570 202 / 1e-60 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275800 [exp] 716 / 0 AT5G12300 285 / 7e-93 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G088400 [exp] 280 / 3e-90 AT5G55530 418 / 9e-145 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Potri.001G361100 [exp] 218 / 4e-66 AT5G55530 431 / 2e-149 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009692 [exp] 319 / 2e-106 AT5G12300 264 / 4e-86 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10036036 [exp] 313 / 1e-103 AT5G12300 192 / 9e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003765 [exp] 227 / 1e-69 AT5G55530 451 / 1e-157 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10043169 [exp] 201 / 4e-61 AT5G55530 274 / 4e-90 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10032578 [exp] 202 / 1e-60 AT5G55530 395 / 2e-136 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10001346 [exp] 121 / 8e-32 AT5G12300 72 / 9e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10016592 [exp] 101 / 7e-24 AT5G55530 152 / 5e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009693 [exp] 70 / 7e-15 AT5G12300 71 / 4e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.009G070400.1 pacid=42770761 polypeptide=Potri.009G070400.1.p locus=Potri.009G070400 ID=Potri.009G070400.1.v4.1 annot-version=v4.1 ATGGATTCTTTCAATGAATCAACTGGGTTCAGGTACAATCCAAATTCAAACACGATGGTCGATGCAGATGGCGATTCTGAGTTCTCCGGGATTCTTGAAA TCTATGTTCATCATGCCAGGAATATTCACAACATATGTATCTATGATAACCAAGATGTTTATGCAAAATTCTCTCTAACTTATAATCCCGATGAAACCCT TTCAACTAGAATTATCAATGGAGGCGGAAAAAACCCAGAATTCAATGAAAACTTCATGATGAAACTCACTCAACTTGATGCAGTCCTCAAATGTGAAATT TGGATGCTTAGTAGAGTTAGAAACTACATGGAGGATCAGCTTCTAGGATTTGCTTTGGTCCCTATTTCACAAGTTTCTGGCAAAGGAAAGGTGACTCAAG ATTACAGCCTCTCCTCCACTGACCTCTTTCACTCTCCAGCTGGCACTGTCCAATTGTCTCTTTCCTTAAACACATCTTTGCCTGTTAAGCCCTCAGCAAC AGCTGCCAACTCGTCAATATCATCAGAGGTTGTGCTTCTTGATAGAAAGATATCGGAGGTTATTTTGGAGCCAGTTGAGTATTCGAGAATTGAATTTCCT GATATCAATGTTGTTAGAGAGAATCAGCAAATGGTCTCAGAGTATTTTGATGGCATGGGTTCCAGGCCTGGCTCTTTTCTTTACCTTGGTGCCTCTCCAC AACCTGCTGTTCATGACTATGAAATGACAACAAATTCCTCCGAGGAAAATCATGGAGGTTCAGGTTCTCCTAATGGCAGCACCCAAAACTCCAGTTTCTT GAGCTCTACGACAACAAGCCTGAGCGATGACAGAAATTCCTCCGATTCAGTTGAGAGAAAGATTCGTTTAGGTGGTCAATCATCAAACTCTCTTAACGTT TTGATCACCACAGAGGCTAATCATAACTCCTGCGCTTGCCCTGACACTCCAACTTCAAAGAAGGGAAATGAAGTCCGAGATGAAAAGGAATCAAATTTTA CAAGCAAGGAGGAGGAGACCAATAAGGAAGGAAACATGAGTTCTATTAAATTTGGTCAAGTATTTTCAGCTCCACTAGGAAACATCAATCTTGAGGCCGA GCAGTCTGCAATGCAGCAGCAAATAGTAGACATGTACATGAGGAGCATGCAACAATTCACAGAATCTTTGGCCAAGATGAAGCTACCTATGGATCTTGAC AAACCGGAACCTGAGGACCGCGGTGACGTGATTCAAAGTCACAGAAATGAACTAGAGCTTGAGAAGAAGAAAAAGGACGGAGGTCGAGTGTTTTATGGTA GCCGGGCATTCTTCTAG
AA sequence Show only first row Show all	>Potri.009G070400.1 pacid=42770761 polypeptide=Potri.009G070400.1.p locus=Potri.009G070400 ID=Potri.009G070400.1.v4.1 annot-version=v4.1 MDSFNESTGFRYNPNSNTMVDADGDSEFSGILEIYVHHARNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINGGGKNPEFNENFMMKLTQLDAVLKCEI WMLSRVRNYMEDQLLGFALVPISQVSGKGKVTQDYSLSSTDLFHSPAGTVQLSLSLNTSLPVKPSATAANSSISSEVVLLDRKISEVILEPVEYSRIEFP DINVVRENQQMVSEYFDGMGSRPGSFLYLGASPQPAVHDYEMTTNSSEENHGGSGSPNGSTQNSSFLSSTTTSLSDDRNSSDSVERKIRLGGQSSNSLNV LITTEANHNSCACPDTPTSKKGNEVRDEKESNFTSKEEETNKEGNMSSIKFGQVFSAPLGNINLEAEQSAMQQQIVDMYMRSMQQFTESLAKMKLPMDLD KPEPEDRGDVIQSHRNELELEKKKKDGGRVFYGSRAFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	0	1
AT2G32240			unknown protein		Potri.006G021200 [exp]	2.00	0.8425
AT4G33565			RING/U-box superfamily protein...		Potri.007G111900 [exp]	2.44	0.8563
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	3.00	0.8346
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	3.16	0.8424
AT1G03055			unknown protein		Potri.005G216400 [exp]	3.60	0.8248
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	4.58	0.8458
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	4.79	0.8642	COMTL3,Pt-GSI.2
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Potri.005G221900 [exp]	4.89	0.8319	LBD16.3
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	10.67	0.7553
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	12.72	0.8144

Compare expression of checked genes

Potri.009G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.