Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19430 224 / 3e-73 RING/U-box superfamily protein (.1.2) AT5G12310 222 / 1e-72 RING/U-box superfamily protein (.1) AT4G14220 56 / 7e-09 RHF1A RING-H2 group F1A (.1) AT2G39100 47 / 6e-06 RING/U-box superfamily protein (.1) AT2G42030 47 / 8e-06 RING/U-box superfamily protein (.1) AT1G14200 44 / 4e-05 RING/U-box superfamily protein (.1) AT3G58030 43 / 0.0001 RING/U-box superfamily protein (.1.2.3.4) AT1G35330 42 / 0.0002 RING/U-box superfamily protein (.1) AT5G15790 40 / 0.0004 RING/U-box superfamily protein (.1.2) AT5G38895 40 / 0.0008 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G275900 [exp] 360 / 3e-127 AT5G19430 236 / 3e-78 RING/U-box superfamily protein (.1.2) Potri.010G092300 [exp] 45 / 1e-05 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.018G064400 [exp] 43 / 9e-05 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 43 / 0.0001 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.001G213800 [exp] 42 / 0.0002 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.002G170300 [exp] 41 / 0.0004 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.013G011400 [exp] 41 / 0.0005 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.008G149300 [exp] 41 / 0.0005 AT5G22000 186 / 4e-55 RING-H2 group F2A (.1.2.3) Potri.003G129900 [exp] 40 / 0.0006 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036034 [exp] 291 / 1e-99 AT5G19430 231 / 7e-76 RING/U-box superfamily protein (.1.2) Lus10009695 [exp] 286 / 1e-97 AT5G19430 221 / 3e-72 RING/U-box superfamily protein (.1.2) Lus10010513 [exp] 47 / 6e-06 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 47 / 7e-06 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10021245 [exp] 45 / 3e-05 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10013606 [exp] 45 / 3e-05 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021063 [exp] 45 / 4e-05 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10034088 [exp] 44 / 6e-05 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10004162 [exp] 44 / 6e-05 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10034165 [exp] 44 / 9e-05 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G070600.1 pacid=42771532 polypeptide=Potri.009G070600.1.p locus=Potri.009G070600 ID=Potri.009G070600.1.v4.1 annot-version=v4.1 ATGACTTCAGTCATCAACATCGACGGTCACGAACCGCTTACTCCTGCCCTTCAACATCAGGGTGAAATGGAGAGTAAAGTGGAGAGTAGCGAAAAGGCAT GTGGGAATCATGGTGGGATTTGTGCTATATGCTTGGATAAGATTGTGCTTCAGGAAACTGCTCTTGTTAAAGGTTGCGAGCATGCGTACTGTGTGACGTG CATCCTTCGATGGGCCACATACAGTAAGAATTCAACCTGTCCTCAGTGCAAACAGCCATTCGAGTTTCTCAATGTTCACCGTTCTCTCGATGGCAGCATC CAGGATTACATGTTCGAGGAAAGTGTGTGCCTCCTCCTTCGAGCTGCATGGTTCATGCCTTTGACCGTGGAGGATCATGAGGATTTTTATGAAGACCCAG ATGATTATTATCCATATGAATATGAATATGAATATGAAGATGAGGATGATGATCTAGATGGAGTGTACTTGAGCAGTTCATCCAATCTTCGCATTGGAAA TCGCAGGTGGGGAGATAATGGCTATGTTAGGGCAGGGCGTCAAGAAGCAAGGCCAGTGCATCGATCAAATTTCGATGACTCGGGGGCCGGCTCTTCACGT GAACCTAAGAAGAAAGAGGCTGCAAAAGATAGAACAGGGAGACGGGCAAAGAGGACGCTCAAGCGTGAAGCGGCCGACAAGGCTGCTGCGGCAAAACATC AGCAGCATTTGACTAGGTTGGGCCGGAAGTGA
AA sequence Show only first row Show all	>Potri.009G070600.1 pacid=42771532 polypeptide=Potri.009G070600.1.p locus=Potri.009G070600 ID=Potri.009G070600.1.v4.1 annot-version=v4.1 MTSVINIDGHEPLTPALQHQGEMESKVESSEKACGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYSKNSTCPQCKQPFEFLNVHRSLDGSI QDYMFEESVCLLLRAAWFMPLTVEDHEDFYEDPDDYYPYEYEYEYEDEDDDLDGVYLSSSSNLRIGNRRWGDNGYVRAGRQEARPVHRSNFDDSGAGSSR EPKKKEAAKDRTGRRAKRTLKREAADKAAAAKHQQHLTRLGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19430			RING/U-box superfamily protein...		Potri.009G070600 [exp]	0	1
AT4G38060			unknown protein		Potri.002G106300 [exp]	17.60	0.6881
AT1G05270			TraB family protein (.1)		Potri.007G121900 [exp]	22.27	0.7555
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.008G069200 [exp]	22.62	0.7468
AT5G60570			Galactose oxidase/kelch repeat...		Potri.019G042100 [exp]	54.08	0.7327
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	54.44	0.7159
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Potri.002G105300 [exp]	55.00	0.7382
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.009G124900 [exp]	55.71	0.7087
AT5G21040		FBX2	F-box protein 2 (.1.2)		Potri.009G157900 [exp]	56.44	0.7236
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	58.58	0.6774
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.006G090600 [exp]	74.83	0.7208

Compare expression of checked genes

Potri.009G070600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.