Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12340 187 / 3e-60 unknown protein AT1G28190 69 / 3e-14 unknown protein AT5G66580 48 / 4e-07 unknown protein AT4G37240 45 / 4e-06 unknown protein AT3G50800 44 / 2e-05 unknown protein AT2G23690 43 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276400 [exp] 360 / 1e-128 AT5G12340 191 / 2e-61 unknown protein Potri.003G160000 [exp] 96 / 4e-24 AT1G28190 168 / 4e-51 unknown protein Potri.001G070700 [exp] 92 / 1e-22 AT1G28190 150 / 2e-44 unknown protein Potri.012G045600 [exp] 55 / 2e-09 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 52 / 1e-08 AT1G18290 122 / 1e-35 unknown protein Potri.004G149800 [exp] 44 / 1e-05 AT5G66580 91 / 7e-24 unknown protein Potri.005G130200 [exp] 44 / 1e-05 AT2G23690 174 / 2e-56 unknown protein Potri.006G105500 [exp] 44 / 2e-05 AT3G03280 65 / 2e-13 unknown protein Potri.006G105600 [exp] 42 / 7e-05 AT3G03280 63 / 9e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036031 [exp] 221 / 2e-73 AT5G12340 192 / 1e-61 unknown protein Lus10009698 [exp] 128 / 6e-37 AT5G12340 109 / 1e-29 unknown protein Lus10019659 [exp] 42 / 4e-05 AT5G66580 141 / 4e-44 unknown protein Lus10000739 [exp] 41 / 0.0001 AT5G66580 105 / 6e-30 unknown protein Lus10013490 [exp] 41 / 0.0002 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 41 / 0.0002 AT3G03280 109 / 3e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.009G071100.1 pacid=42771649 polypeptide=Potri.009G071100.1.p locus=Potri.009G071100 ID=Potri.009G071100.1.v4.1 annot-version=v4.1 ATGGGATATGCAGTGTTTCCATGCTTCCATCAAAGCTCAAGATCTTCAGTGGTGAAGCTAATCTTCTGGGAAGGAACCACAAGAATCTTAACGGGCAGCA ACAAACACATAGCTGGAGAGATCATGTTTCAGAATCCAGACAAAATGGTCTGCCATGCAGATTCTTTCTTCATTGGTCATCCTGTTCCATCCCTAGCCAT TGATGATGAGCTCATGCCAGGCCAAACCTACTTTGTCCTTCCATTAGATCGCTTTGCATGCAATGTTTTGTCAGCTTCTTCTCTTGCAGCCTTCAGCTCT AGCCCTAAACGAACCCCTATTAATTTCGGCGAGTCTCCTTTCCAGTACATAAAGGGTGCTGGGGGTAGGGTTATGATTAAGGTTGTGCCAGAATTCATAA CAAGGCTTATAAATAGAGGTGGAGATCAAGATCAAACAGGTTCTACTAGCCCTGGTAATAGTTTTCTTTGTAGCACTCCAGAGTTGAAGAAGCATTATGA ACAGCTGGTTGGATCAAAAGAACAAACATGGTCACCTAAACTTGAGACTATTTCAGAGTACAAAATAAGGTACTCTCCCTGCAGGTTTACAAGGTTGAAG TGGAAACAAAACGAGAAGGCATAA
AA sequence Show only first row Show all	>Potri.009G071100.1 pacid=42771649 polypeptide=Potri.009G071100.1.p locus=Potri.009G071100 ID=Potri.009G071100.1.v4.1 annot-version=v4.1 MGYAVFPCFHQSSRSSVVKLIFWEGTTRILTGSNKHIAGEIMFQNPDKMVCHADSFFIGHPVPSLAIDDELMPGQTYFVLPLDRFACNVLSASSLAAFSS SPKRTPINFGESPFQYIKGAGGRVMIKVVPEFITRLINRGGDQDQTGSTSPGNSFLCSTPELKKHYEQLVGSKEQTWSPKLETISEYKIRYSPCRFTRLK WKQNEKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12340			unknown protein		Potri.009G071100 [exp]	0	1
AT4G05100	MYB	ATMYB74	myb domain protein 74 (.1)		Potri.004G026600 [exp]	1.00	0.9755
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Potri.005G223100 [exp]	2.82	0.9664
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.003G165000 [exp]	3.46	0.9680
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	4.24	0.9564	HMGR3.4
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.009G010200 [exp]	4.47	0.9654
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.010G187800 [exp]	7.14	0.9409	Pt-FAD3.3
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	7.74	0.9444
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Potri.004G102500 [exp]	8.94	0.9377	MANG.1
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.002G155300 [exp]	9.16	0.9432	BAP2.1
AT1G30760			FAD-binding Berberine family p...		Potri.011G159400 [exp]	9.79	0.9413

Compare expression of checked genes

Potri.009G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.