Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03250 303 / 4e-97 HD Homeodomain-like superfamily protein (.1) AT1G28420 72 / 5e-13 HD HB-1 homeobox-1 (.1) AT5G44180 64 / 2e-10 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 50 / 4e-06 Homeodomain-like transcriptional regulator (.1) AT1G17920 45 / 0.0002 HD HDG12 homeodomain GLABROUS 12 (.1) AT4G25530 43 / 0.0005 HD HDG6, FWA HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276800 [exp] 817 / 0 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G048675 [exp] 73 / 3e-13 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 73 / 3e-13 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.017G016200 [exp] 66 / 6e-11 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 64 / 2e-10 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.015G141800 [exp] 45 / 0.0001 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.012G139300 [exp] 45 / 0.0001 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.001G112200 [exp] 42 / 0.0009 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025454 [exp] 71 / 2e-12 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10015325 [exp] 69 / 7e-12 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10015400 [exp] 66 / 9e-12 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10033644 [exp] 66 / 1e-11 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10039870 [exp] 67 / 2e-11 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10013979 [exp] 65 / 2e-11 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10017688 [exp] 65 / 3e-11 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 66 / 5e-11 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10027633 [exp] 45 / 7e-05 AT4G37790 138 / 3e-40 Homeobox-leucine zipper protein family (.1) Lus10017824 [exp] 43 / 0.0002 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Potri.009G071700.1 pacid=42772912 polypeptide=Potri.009G071700.1.p locus=Potri.009G071700 ID=Potri.009G071700.1.v4.1 annot-version=v4.1 ATGGAAGAATCAAGTGAAGTGCATTTTGGAGAGAATAGAGTTTCTCCAGAGAAGAATTTGAAAAGGACAGTCAAGACACCAGCCCAGGTTGTCGCTTTGG AGAACTTTTATAATGAGCACAAATATCCCACAGAGGAAATGAAATCAGAACTTGCAGACCAAATAGGGTTGACAGAAAAGCAAATATCTAGCTGGTTTTG CCACAGAAGGCTAAAAGACAAAAGATTGAGAGATGAAGTATGCACTAATGGACGACAAGATCGATCTAGCGGTATTATTCAGGATCGAGGGAGTGGGTTG AGGCAAGATTCATGTGGCAGTACCAAACAAGGTGATTATAGGAATCTTGATCCAAGGGAAGTTGAGAGCCAGAGACTTTATGGTCGAGATTTTCATCCTG CTGATCTAACCTATGACCGCACGAGTCGCTATACAGGGAATGTTACCGGCATTGATAATATATCTTCAGGAAGTAGCTCATCGTTGCAAGATAAGTTTGT TTGTCAAAGAGAGGATCCTTATGACGCAGAAACCTCAAAGTACCTAGCACAGAATGGAGCTGCCATGCCATTAATTCCCAAGGGTACTGATAGTTTTGGG TATAAACCATCAGGATATTTGAAAGTGAAGGGTGAAATTGAGAATGCTGCTATTACTGCTGTCAAGATGCAATTGGGCAGGCATTATAAGGAGGATGGTC CACCACTAGGTGTTGAATTCCAGCCACTTCCTCCTGGTGCTTTTGCATCCCCAAGTAGAGATCCAGTCAGTGGACCAATCTATGTGGGAGATCTTGCTCA GATGTGTTCTCCTGATGTTTCTGGGGTTCGAAAGCAATCCAGTCTTGGCGCTAGATATGAAGTATATAGCACCAAGATGAGTTCTCATGATTCATATACA GAGGGAGCAAATTGTAATCCCGAGCCCTCTGATTCTCATGATAGAAAATCTCATCACCATCTAGAACAGAAGCCTACCTATAATGGTTCCAATTCTAATG CTGGTGGGAACTCTGCCATGGATATGCTCGATGATCTTGCTGGTGAAACATCAGCCTATGTAAACAAAAGACATTATAGGATGAGCTCTAAGCATGGTTT TGAGGAGAGAAGATCGGATTCTCTTTCAACCCATCTTGGTCCCAGTGGTAGGAGAGTTAATAGTGAAAAGACAGAAGCTTGGTTGCATGACTGTGATAAT GACAATCCTAAGATAGTTCAAAGGAATAATTACACGTCTAAGCATCCGCACTTGATGCGTGGATCTGGAAAATCTCTTGATACAGAGGAGAGAGCACGGT GTACGATCATGGAAAAGGAGGACAAACTTCATGGAGAAATGAAAAGAATGAAAGGCTCTCACGACCCAGTTAGAGTAAAGAGGCATCCAACGGATGAAAC AACTGTTGCAAAAAGATTCAGAGTTGACTTTCCACAGCAAGAACATGTGGCAAAAGCATCGTTTTCTGAAATACGTCGAAGGACAAATCTGACTAAACGG TCTGCCATGGAGAGGCCATCTAGTTTCAGCGAGGATGAAACTCCAGAAACCAGTTCTTCGGCAGAATGA
AA sequence Show only first row Show all	>Potri.009G071700.1 pacid=42772912 polypeptide=Potri.009G071700.1.p locus=Potri.009G071700 ID=Potri.009G071700.1.v4.1 annot-version=v4.1 MEESSEVHFGENRVSPEKNLKRTVKTPAQVVALENFYNEHKYPTEEMKSELADQIGLTEKQISSWFCHRRLKDKRLRDEVCTNGRQDRSSGIIQDRGSGL RQDSCGSTKQGDYRNLDPREVESQRLYGRDFHPADLTYDRTSRYTGNVTGIDNISSGSSSSLQDKFVCQREDPYDAETSKYLAQNGAAMPLIPKGTDSFG YKPSGYLKVKGEIENAAITAVKMQLGRHYKEDGPPLGVEFQPLPPGAFASPSRDPVSGPIYVGDLAQMCSPDVSGVRKQSSLGARYEVYSTKMSSHDSYT EGANCNPEPSDSHDRKSHHHLEQKPTYNGSNSNAGGNSAMDMLDDLAGETSAYVNKRHYRMSSKHGFEERRSDSLSTHLGPSGRRVNSEKTEAWLHDCDN DNPKIVQRNNYTSKHPHLMRGSGKSLDTEERARCTIMEKEDKLHGEMKRMKGSHDPVRVKRHPTDETTVAKRFRVDFPQQEHVAKASFSEIRRRTNLTKR SAMERPSSFSEDETPETSSSAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	1.73	0.8315
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	2.00	0.8509
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	2.44	0.8260
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	3.16	0.8322
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	4.89	0.8312
AT5G50340			ATP-dependent peptidases;nucle...		Potri.001G191200 [exp]	10.67	0.7680
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.005G001800 [exp]	10.95	0.7673	Pt-PIF3.2
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	12.96	0.7814
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	14.49	0.7741	Pt-UBP15.2
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	14.73	0.8111	Pt-SPY.1

Compare expression of checked genes

Potri.009G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.