Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58600 523 / 0 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 468 / 9e-165 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT1G29050 380 / 1e-130 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 370 / 7e-127 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT2G42570 350 / 4e-119 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 340 / 4e-115 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 336 / 1e-113 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT3G14850 327 / 4e-110 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT1G78710 314 / 5e-105 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G49340 306 / 2e-100 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278300 [exp] 754 / 0 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.011G064700 [exp] 384 / 2e-132 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 374 / 1e-128 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.019G090200 [exp] 371 / 4e-127 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.011G106200 [exp] 366 / 2e-125 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 363 / 2e-124 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.003G201700 [exp] 345 / 3e-117 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 338 / 1e-114 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.003G201600 [exp] 336 / 8e-114 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031301 [exp] 522 / 0 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10031871 [exp] 520 / 0 AT5G58600 450 / 8e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10013929 [exp] 366 / 4e-125 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10000988 [exp] 365 / 4e-125 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 352 / 8e-120 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10002198 [exp] 342 / 6e-116 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 337 / 5e-114 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10019774 [exp] 313 / 3e-104 AT1G29050 361 / 2e-123 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 306 / 1e-101 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10039559 [exp] 304 / 5e-101 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.009G072800.1 pacid=42772366 polypeptide=Potri.009G072800.1.p locus=Potri.009G072800 ID=Potri.009G072800.1.v4.1 annot-version=v4.1 ATGTCTCTTGCTTGTATCCGGTCCTCTTGCAATCTATTAGCATCATGTTTTGCGATTGTTTTCTTGGTTTTGCTTCAAACCAAGGTTGCAACTTCAGCTT TGATAATGAGCATGAGAAACCACCACAACCACCACCAGCATAGATTGCCAAGGCTGCAAGCTAATCAAAGTACTTGTGCATTGTTTGTCGGCACTTGGGT TCGTGATGAATCATACCCATTGTATCAATCTTCTAATTGCCCAACCATTATTGACGCTGAATTCAACTGCCAAATGTATGGCAGGCCTGACTCTGATTAT CTCAAGTACAGATGGCAGCCTCTCAATTGCGAGCTCCCAAGATTCAATGGGCTTGAATTTTTGCTAAATATGAGAGGGAAAAGTATGATGTTTGTGGGGG ACTCCCTTGGACGGAATCAATGGGAGTCTTTGATTTGCTTGATTTCATCGTCGGTGCCTCGAACTTCAACACAAATGAGTAGAGGAGATCCCTTTTCCAT CTTCAAGTTCTCGGATTATGATGTGTCCATTTCCTTTTATAAAGCTCCATATTTGGTAGACATAGATGTGGTACAAGGGAAGAGGGTTCTGAGGCTAGAG GAAATTTCGGGGAATGCCAACGCCTGGAGAAATGTTGATGTGCTGATTTTCAACACTGGTCACTGGTGGAGTCACCAAGGTTCTCTCCAAGGATGGGATT ACATGGAATCAGGAGGTACATTCTACCAAGATATGGATCGTCTGGTTGCATTGGAAAGAGGGCTAAGAACATGGGCTAAATGGGTGGACTCCAACATCGA CACCACTAGAACCAGAGTCTTTTTCCAGTCCATCTCTCCTACACATTACAATCCAAGTGAATGGAGCGAGGGGACGACAGTAGCAACAACGAGAAATTGC TATGGCGAGACAACACCAATGAATGGAATGACATACCCTGGAGCATACCCTGATCAAATGAGGGTAGTGGATACCGTGATCAGAGGCATGCATACTCCTG CATATTTGTTGGACATCACAATGCTCTCAGAGTTGAGAAAAGATGGGCACCCATCAATTTATAGTGGCGATCTGAGCCCTCAGCAGAGGGCGGATCCATC GGGATCCGCGGATTGTAGCCATTGGTGCCTTCCTGGACTGCCTGATACTTGGAACCAATTGTTCTACGCTGCCTTGTTCTTTTAA
AA sequence Show only first row Show all	>Potri.009G072800.1 pacid=42772366 polypeptide=Potri.009G072800.1.p locus=Potri.009G072800 ID=Potri.009G072800.1.v4.1 annot-version=v4.1 MSLACIRSSCNLLASCFAIVFLVLLQTKVATSALIMSMRNHHNHHQHRLPRLQANQSTCALFVGTWVRDESYPLYQSSNCPTIIDAEFNCQMYGRPDSDY LKYRWQPLNCELPRFNGLEFLLNMRGKSMMFVGDSLGRNQWESLICLISSSVPRTSTQMSRGDPFSIFKFSDYDVSISFYKAPYLVDIDVVQGKRVLRLE EISGNANAWRNVDVLIFNTGHWWSHQGSLQGWDYMESGGTFYQDMDRLVALERGLRTWAKWVDSNIDTTRTRVFFQSISPTHYNPSEWSEGTTVATTRNC YGETTPMNGMTYPGAYPDQMRVVDTVIRGMHTPAYLLDITMLSELRKDGHPSIYSGDLSPQQRADPSGSADCSHWCLPGLPDTWNQLFYAALFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.009G072800 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.004G038100 [exp]	1.41	0.7977
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	1.73	0.7602
AT1G80170			Pectin lyase-like superfamily ...		Potri.001G171900 [exp]	3.74	0.7739
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	9.16	0.7414	PME2.12
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	12.00	0.7387
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	14.49	0.7269
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	15.49	0.7544
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Potri.001G470900 [exp]	19.28	0.7072
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.006G192400 [exp]	21.63	0.7326
AT1G01300			Eukaryotic aspartyl protease f...		Potri.014G099400 [exp]	23.74	0.6907

Compare expression of checked genes

Potri.009G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.