Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AS1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47340 1027 / 0 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G10240 941 / 0 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 937 / 0 ASN2 asparagine synthetase 2 (.1.2) AT5G19140 59 / 2e-09 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT4G27450 53 / 2e-07 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 48 / 9e-06 Aluminium induced protein with YGL and LRDR motifs (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278400 [exp] 1127 / 0 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 962 / 0 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2) Potri.008G203400 [exp] 54 / 5e-08 AT5G19140 397 / 4e-142 Aluminium induced protein with YGL and LRDR motifs (.1.2) Potri.001G403000 [exp] 54 / 7e-08 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 53 / 2e-07 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G049900 [exp] 42 / 0.0007 AT4G27450 383 / 6e-136 Aluminium induced protein with YGL and LRDR motifs (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042281 [exp] 1070 / 0 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10031870 [exp] 997 / 0 AT3G47340 1001 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 891 / 0 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 860 / 0 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10031300 [exp] 146 / 5e-40 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10026376 [exp] 138 / 1e-37 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 86 / 2e-18 AT3G17930 170 / 1e-52 unknown protein Lus10034883 [exp] 56 / 3e-08 AT4G27450 365 / 6e-129 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10033418 [exp] 56 / 3e-08 AT4G27450 369 / 2e-130 Aluminium induced protein with YGL and LRDR motifs (.1) Lus10010505 [exp] 54 / 6e-08 AT5G19140 392 / 4e-140 Aluminium induced protein with YGL and LRDR motifs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00733 [poplar] [flax] Asn_synthase Asparagine synthase CL0052 [poplar] [flax] NTN PF12481 [poplar] [flax] DUF3700 Aluminium induced protein
Representative CDS sequence Show only first row Show all	>Potri.009G072900.2 pacid=42771169 polypeptide=Potri.009G072900.2.p locus=Potri.009G072900 ID=Potri.009G072900.2.v4.1 annot-version=v4.1 ATGTGTGGGATACTTGCTGTTTTGGGTTGTTCTGACGACTCTCAGGCCAAGAGGGTTCGGGTGCTAGAGCTCTCTCGCAGGTTGAAGCACCGTGGTCCAG ATTGGAGTGGGCTCTATCAGTGCGGTGACTTTTACTTGGCTCATCAAAGGCTGGCTATTATCGATCCTGCTTCTGGTGACCAGCCACTCTTTAATGAGGA CCAAGCCATCGTTGTCACGGTGAACGGAGAAATTTACAACCATGAAGAACTAAGGAAGCGTTTGCCAAATCACAAGTTCCGAACAGGCAGTGACTGTGAT GTTATCGCCCATCTGTACGAGGAATATGGCGAAAATTTTGTGGACATGTTGGATGGAATGTTTTCATTTGTTCTGCTGGATACTCGTGACAACAGTTTCA TTGTTGCTCGTGACGCCATTGGGATCACCCCCCTCTATATTGGCTGGGGACTTGATGGGTCCGTGTGGATTTCATCTGAACTGAAAGGTCTGAATGACGA CTGTGAACATTTTGAGTGCTTTCCTCCTGGTCATTTGTACTCGAGTAAATCGGGTGGATTACGTCGTTGGTACAATCCTCCTTGGTTCTGCGAGGCCATT CCCTCAACCCCATATGATCCACTTGTTCTGAGACGTGCATTTGAAAAGGCTGTGATTAAAAGGCTAATGACTGATGTGCCTTTTGGAGTTCTTTTATCTG GAGGCCTAGATTCATCACTGGTTGCTGCTGTTACTGCTCGCCATTTGGCAGGTACAAAGGCTGCCAGACAATGGGGGGCACAACTCCATTCCTTCTGTGT TGGCCTAGAGAATTCACCAGATTTGAAGGCTGCAAGAGAAGTTGCAGATTATCTGGGAACCGTCCACCATGAATTTTACTTCACGGTTCAGGATGGTATA GATGCCATTGAGGATGTCATATACCATATAGAAACATATGATGTTACAACCATCAGAGCAAGTACCCCTATGTTCCTAATGGCTCGTAAGATCAAGGCAC TAGGAGTGAAGATGGTTATTTCTGGTGAAGGTTCTGATGAGATTTTTGGTGGGTATTTGTACTTTCATAAGGCACCTAACAAAGAAGAGTTACACCGCGA AACATGTCGCAAGATAAAGGCCCTTCATCAATATGATTGCTTGAGAGCTAACAAGGCAACATCTGCTTGGGGTTTAGAAGCCCGTGTCCCCTTCTTGGAC AAGGATTTTATTAATGTTGCAATGGCTATTGATCCTGAATGGAAGATGATCAAACCTGGACAAGGCCATATTGAGAAATGGGTCCTTAGGAAAGCCTTTG ACGACGAGGAGCATCCTTATCTGCCTAAGCATATTCTTTACAGGCAGAAAGAGCAATTTAGCGATGGTGTTGGCTATAGCTGGATCGATGGTCTCAAAGC TCATGCTGCCCAACATGTGACTGACAAGATGATGCAAAATGCTGAGCACATCTTTCCACATAATACCCCTACCACCAAAGAAGCCTATTACTACAGAATG ATTTTTGAGAGGTTCTTCCCACAGAACTCAGCCAGGCTGTCTGTTCCTGGAGGAGCCAGTGTAGCATGCAGCACAGCTAAAGCTGTTGAATGGGATGCTG CCTGGTCCAATAATCTGGATCCTTCTGGACGGGCTGCATTGGGTGTACATCTCTCTGATTATGATCAGCAGGCAGCTCTTGCCAATGCAGGAGTGGTGCC ACCAAAAATTATTGACACTCTTCCTCGAATGTTGGAAGTTAGTGCTTCGGGAGTTGCGATCCACAGTTAG
AA sequence Show only first row Show all	>Potri.009G072900.2 pacid=42771169 polypeptide=Potri.009G072900.2.p locus=Potri.009G072900 ID=Potri.009G072900.2.v4.1 annot-version=v4.1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQCGDFYLAHQRLAIIDPASGDQPLFNEDQAIVVTVNGEIYNHEELRKRLPNHKFRTGSDCD VIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITPLYIGWGLDGSVWISSELKGLNDDCEHFECFPPGHLYSSKSGGLRRWYNPPWFCEAI PSTPYDPLVLRRAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVTARHLAGTKAARQWGAQLHSFCVGLENSPDLKAAREVADYLGTVHHEFYFTVQDGI DAIEDVIYHIETYDVTTIRASTPMFLMARKIKALGVKMVISGEGSDEIFGGYLYFHKAPNKEELHRETCRKIKALHQYDCLRANKATSAWGLEARVPFLD KDFINVAMAIDPEWKMIKPGQGHIEKWVLRKAFDDEEHPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAQHVTDKMMQNAEHIFPHNTPTTKEAYYYRM IFERFFPQNSARLSVPGGASVACSTAKAVEWDAAWSNNLDPSGRAALGVHLSDYDQQAALANAGVVPPKIIDTLPRMLEVSASGVAIHS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	0	1	Pt-AS1.3
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Potri.014G047900 [exp]	5.29	0.8577	Pt-DAD1.3
AT1G68180			RING/U-box superfamily protein...		Potri.015G127600 [exp]	5.56	0.8842
AT4G03540			Uncharacterised protein family...		Potri.011G052100 [exp]	6.24	0.8502
AT5G19875			unknown protein		Potri.001G009300 [exp]	14.00	0.8497
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040215 [exp]	14.24	0.7782
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Potri.005G078000 [exp]	14.42	0.7959
AT1G11380			PLAC8 family protein (.1)		Potri.011G040100 [exp]	18.33	0.8155
					Potri.017G142923 [exp]	18.86	0.8592
AT5G06240		EMB2735	embryo defective 2735 (.1)		Potri.006G208200 [exp]	19.79	0.8552
AT1G03670			ankyrin repeat family protein ...		Potri.013G134500 [exp]	23.32	0.8434

Compare expression of checked genes

Potri.009G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.