Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07150 361 / 6e-120 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT2G30040 353 / 2e-117 MAPKKK14 mitogen-activated protein kinase kinase kinase 14 (.1) AT2G32510 221 / 3e-67 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT1G05100 215 / 1e-65 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT5G55090 217 / 7e-65 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT4G26890 199 / 4e-58 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT3G50310 184 / 1e-53 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT1G63700 191 / 1e-52 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G67080 179 / 1e-51 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G53570 184 / 4e-51 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278600 [exp] 681 / 0 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.014G155000 [exp] 226 / 8e-70 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.011G007400 [exp] 227 / 3e-68 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 226 / 4e-68 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.003G130000 [exp] 215 / 2e-65 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.002G228200 [exp] 216 / 4e-65 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.005G139300 [exp] 203 / 9e-61 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G102900 [exp] 193 / 3e-53 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G044800 [exp] 182 / 7e-53 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030042 [exp] 222 / 4e-67 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 216 / 7e-65 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 206 / 4e-60 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10021551 [exp] 197 / 1e-56 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10032279 [exp] 198 / 5e-55 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10022951 [exp] 189 / 3e-54 AT4G26890 325 / 3e-107 mitogen-activated protein kinase kinase kinase 16 (.1) Lus10024645 [exp] 195 / 5e-54 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 193 / 1e-53 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10012668 [exp] 181 / 3e-52 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10027496 [exp] 187 / 3e-51 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G073200.3 pacid=42771066 polypeptide=Potri.009G073200.3.p locus=Potri.009G073200 ID=Potri.009G073200.3.v4.1 annot-version=v4.1 ATGGTTTCTTGGGTTAGAGGAAAGTGCGTAGGCAAAGGCTCGTTTGGCTCCGTCAACTTGGCTTTCAACAAACAAACTGGTGCCGTTTTCGCCGTGAAGA CTGCCAGTGAAGCAAATCAAGTTCAGGCGTTAGACAACGAAATCAAGATTCTAAGCTCGCTATCTTCTCCTTTTATAGTTAAATTCCTCGGCGACGACGT CTCGTTTGAGAACTCGAGAGCTTGTCGGAATCTTCACATGGAGTACTTGCCCGGCGGCACCGTTGCTGACCTGGCTTCATCAACTCAACGTTTCGCTGAT GTGAACGAGGAGACTGTTCGGTCATTTACTTACTGTATAGTCTCTGCTTTGAAGTACATACACTCAAGAGGTATTGTTCACTGTGATGTTAAAGGACGGA ATATTCTATTGGGTCACAGTTTCGATTCCGTTAAACTAGCAGATTTCGGGTCCGCGATTGACGCCACAAGCGGCGAGCCTCTCTTGCCCCGTGGAAGTCC GTTGTGGATGGCTCCGGAGGTGATTAAACGAGAATACCAGGGACCGGAAAGTGACGTTTGGTCTTTGGGCTGCACAATTATCGAGATGGTCACTGGAAAA CCGGCCTGGGAGGATCACGGGGTTGACTCACTAAGTCGAATCGGGTTTTCAAACGAGTTGCCCGAGTTGCCGGGTCAGCTGTCTGTACTCGGTCGGGATT TTTTGAAGAAGTGTTTGGAGAGGGAACCAAGTAAGCGGTGGAGCTGTGATCAGCTACTGGAGCATCCATTCTTAGCTTCCGTGAGTCCTAATTTGTTGGG CAACGAATTGTCTCCACGTTGCGTACTTGATTGGTTTAATTCAGATTTCGAGGAAGATATTGACGTAATGGAACGTGGGATGAGTTCGAGTTTTGAGAAT ATTGAGGTTGCGGCTAGAAATAGGATTGGTAAATTGGTGGCAAGTGGGGGGGTAAATTGGGAAACAAAAGATGGCTGGGTGGAGGTGAGGAGCTGTTGCG GGCATCGTGGAAGAGGAGAGGAGGAAGAATTGGGGACAAGTTCGGTATATTCTTCTGATTCGGCGTGGATAAGTGAGGAAGGGTGTATAAAATGGGAAGT TTGTAATTCCATTGGCGGTGAATTACACGTTGACGGGTCTAACAGGTCGATCTCTTGTGGAATTTGCTGGTGTGGTGCGGTGTGCTCAGGCAGGAAAGGG GGTGGTGGTTTGAGTTGTCATTATGGGTCACAAAAGGTGGAGCTATCGGTGGAGGGGTGTGAGTTGCTGGTGTTGGTAGGGATTTACCACATATTGTTGT GTAATTTGTTATTGTATTTACTGCAATTTATGAGAACAATAAGACATAATTTTATCCTTTATTCTAAACTTTTATTACTGGGTTTAGTTCATGCATGTGA ATGTGTGTATATCCAGCTGTGTTTTCAGTCCAGTTATGGAGTTGTTCTGCTCTTTACAGGGTGTAGAACTACTATTCTGACATATAGTAACACAACAGCA TGA
AA sequence Show only first row Show all	>Potri.009G073200.3 pacid=42771066 polypeptide=Potri.009G073200.3.p locus=Potri.009G073200 ID=Potri.009G073200.3.v4.1 annot-version=v4.1 MVSWVRGKCVGKGSFGSVNLAFNKQTGAVFAVKTASEANQVQALDNEIKILSSLSSPFIVKFLGDDVSFENSRACRNLHMEYLPGGTVADLASSTQRFAD VNEETVRSFTYCIVSALKYIHSRGIVHCDVKGRNILLGHSFDSVKLADFGSAIDATSGEPLLPRGSPLWMAPEVIKREYQGPESDVWSLGCTIIEMVTGK PAWEDHGVDSLSRIGFSNELPELPGQLSVLGRDFLKKCLEREPSKRWSCDQLLEHPFLASVSPNLLGNELSPRCVLDWFNSDFEEDIDVMERGMSSSFEN IEVAARNRIGKLVASGGVNWETKDGWVEVRSCCGHRGRGEEEELGTSSVYSSDSAWISEEGCIKWEVCNSIGGELHVDGSNRSISCGICWCGAVCSGRKG GGGLSCHYGSQKVELSVEGCELLVLVGIYHILLCNLLLYLLQFMRTIRHNFILYSKLLLLGLVHACECVYIQLCFQSSYGVVLLFTGCRTTILTYSNTTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.009G073200 [exp]	0	1
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.018G097700 [exp]	1.00	0.8378
AT3G22260			Cysteine proteinases superfami...		Potri.016G019700 [exp]	1.41	0.8200
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	2.44	0.7969
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	10.00	0.7501
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	12.44	0.7899
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Potri.006G208251 [exp]	14.24	0.7827
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.005G076400 [exp]	14.28	0.7526
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.008G109100 [exp]	15.19	0.7499
AT5G24890			unknown protein		Potri.006G273100 [exp]	17.54	0.7450
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146100 [exp]	20.14	0.7434

Compare expression of checked genes

Potri.009G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.