Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11130 3007 / 0 Clathrin, heavy chain (.1) AT3G08530 2997 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278800 [exp] 3159 / 0 AT3G11130 2982 / 0.0 Clathrin, heavy chain (.1) Potri.010G186900 [exp] 3048 / 0 AT3G11130 3104 / 0.0 Clathrin, heavy chain (.1) Potri.008G070600 [exp] 3033 / 0 AT3G11130 3139 / 0.0 Clathrin, heavy chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030393 [exp] 1410 / 0 AT3G08530 1518 / 0.0 Clathrin, heavy chain (.1) Lus10028976 [exp] 1152 / 0 AT3G08530 1258 / 0.0 Clathrin, heavy chain (.1) Lus10037845 [exp] 1135 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 1068 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS CL0020 [poplar] [flax] TPR PF01394 [poplar] [flax] Clathrin_propel Clathrin propeller repeat CL0020 [poplar] [flax] TPR PF09268 [poplar] [flax] Clathrin-link Clathrin, heavy-chain linker CL0020 [poplar] [flax] TPR PF13838 [poplar] [flax] Clathrin_H_link Clathrin-H-link
Representative CDS sequence Show only first row Show all	>Potri.009G073300.1 pacid=42771781 polypeptide=Potri.009G073300.1.p locus=Potri.009G073300 ID=Potri.009G073300.1.v4.1 annot-version=v4.1 ATGGCTGCTGCCAATGCCCCAATCACCATGAAAGAGGCTCTAACGTTGCCGAGCCTCGGTATCAACCCACAGTTCATAAACTTCACGCATGTGACTATGG AATCAGAGAAGTACATATGCATCAGAGAAACGTCGCCACAGAACAGCGTGGTTATTGTCGACATGAACATGCCTATGCAGCCTCTAAGAAGGCCTATCAC TGCCGATTCCGCCTTGATGAATCCTAATTCTCGAATTCTCGCTCTCAAAGCCCAACTGCCGGGAACTACTCAGGATCATTTGCAGATATTTAATATAGAA CTGAAAGCGAAAGTGAAATCTCATCAAATGCCTGAGCAGGTTGTGTTTTGGAAGTGGATTAGCCCTAAGATGCTGGCCCTGGTAACTCAGACTTCAGTTT ATCATTGGTCAATTGAAGGTGATTCGGAGCCTGTGAAGATGTTTGATAGAACAGCTAATCTACAAGGTAATCAGATAATCAACTATCGATGTGATCCTTC AGAAAAGTGGCTGGTCCTCATTGGAATTGCTCAAGGTCCACCAGAGAGGCCACAATTAGTCAAAGGGAATATGCAGCTTTTCTCTGTGGATCAGCAGCGT AGTCAGGCTCTTGAAGCACATGCTGCGTCATTTGCCACATTTAAAGTTGCAGGAAATGAAAGCCCTTCAACCCTTATCTCTTTTGCATCAAGGTCGTTTA ATGCTGGACAACTAACATCAAAGTTGCATGTTATTGAACTTGGTGCTGTGCCAGGCAAACCTTCATTTACCAAGAAGCAAGCAGACCTGTTCTTTCCACC AGACTTTGCTGATGATTTTCCTGTGTCAATGCAGATATCCCAAAAGTATGGCTTAATATATGCGATCACAAAGCAAGGACTTCTATTTGTTTATGACTTA GAGACTGCCAGCGCAATTTATAGAAATCGAATCAGTCCAGATCCTATATTTTTGACTACTGATGCTTCTTCAGTAGGTGGCTTCTATGCTGTCAATAGGA GAGGACAGGTTTTGCTTGCCACTGTAAATGAAGCAACTATTGTGCCTTTTGTTAGTGGCCAGTTAAACAATCTTGAACTTGCTGTTAATCTTGCCAAAAG AGGAAATCTTCCTGGAGCTGAGAATCTGGTTGTCCAGCGGTTTCAAGAATTATTTTCTCAATCAAAGTATAAGGAGGCCGCAGAACTTGCCGCAGAATCT CCACAAGGAATCCTCCGAACTCCTGATACTGTTGCTAAATTCCAGAGCGTTCCAGTTCAAGCTGGGCAAACACCACCATTGTTGCAGTACTTTGGAACTC TGTTGACTAGAGGAAAGCTTAATGCTTTTGAATCATTGGAATTATCACGTCTTGTTGTAAATCAGAATAAGAAAAATCTTCTGGAGAACTGGTTGGCTGA GGACAAGCTTGAATGCACTGAAGAGCTTGGAGATCTTGTGAAGACCGTTGATAATGACCTTGCATTGAAGATATATATCAAAGCCAGGGCAACTCCAAAA GTTGTTGCAGCATTTGCTGAGAGGAGGGAGTTTGACAAGATTCTTATATACTCAAAGCAGGTTGGCTACAACCCTGATTATTTGTTCCTCCTCCAAACAA TATTGCGGACAGACCCTCAGGCTGCTGTTAATTTTGCTCTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACAATAACTGATCTATT CCTTCAGAGGAATTTGATCCGCGAGGCAACAGCTTTTTTGTTGGATGTTCTGAAGCCAAATTTGCCTGAGCATGGATACCTTCAAACTAAGGTTTTGGAG ATCAATCTTGTGACATTTCCAAATGTTGCAGATGCTATATTAGCTAATGGTATGTTTAGTCACTATGATCGCCCACGTATTGGCCAACTCTGTGAAAAAG CTGGGTTGTATATTCGAGCACTTCAGCACTATACTGAGTTGCCTGATATTAAACGTGTTATTGTGAACACACATGCCATTGAGCCTCAGGCTCTTGTCGA GTTCTTTGGTACTCTTTCTCGAGAATGGGCTCTTGACTGTATGAAAGATCTACTTCTTGTCAACCTGAGGGGCAACCTTCAGATTATTGTGCAGACTGCC AAAGAATACTGTGAGCAATTGGGTGTGGATGCATGCATAAAGCTCTTTGAGCAGTTTAAGTCATATGAAGGACTGTATTTCTTTTTGGGTTCATATTTGA GCTCTAGTGAGGATCCTGAAATCCACTTCAAGTACATTGAAGCAGCTGCTAAAACTGGGCAGATTAAGGAGGTAGAACGTGTGACACGTGAATCGAACTT CTATGATGCTGAAAAGACGAAGAACTTTTTAATGGAAGCCAAGCTTCCTGATGCACGTCCACTGATCAATGTCTGTGATCGTTTTGGTTTTGTCCCAGAC CTTACCCACTATCTGTTTGTCAACAATATGCTTCGCTATATTGAGGGTTATGTTCAAAAGGTCAATCCAGGAAATGCTCCTTTAGTTGTAGGACAACTGC TTGATGATGAATGTGCTGAAGATTTCATTAAAGGCCTTATTCTGTCTGTTCGTTCTCTTCTGCCAGTTGAGCCCTTGGTGGAGGAGTGTGAGAAGAGGAA TCGTCTCCGCTTGCTCACTCAGTTCTTGGAGCATCTAGTCAGTGAGGGAAGCCAAGATGTGCATGTTCACAATGCTCTTGGTAAAATCATTATTGAAAGT GGTGACAATCCAGAGCATTTTCTTACTACCAACCCATATTACGATTCACGTGTTGTTGGTAAATATTGTGAGAAGCGCGATCCCACCCTTGCTGTTGTTG CCTACCGAAGAGGACAGTGTGATGATGAATTAATCAATGTCACAAACAAGAATTCATTGTTCAAACTGCAGGCCAGATATGTTGTAGAACGGATGGATGG TGATCTCTGGGATAAAGCCCTTAGTCCTGATAATGAGTATAGAAGGCAGTTGATTGATCAGGTTGTATCGACTGCTTTGCCTGAAAGCAAGAGTCCTGAT CAAGTTTCAGCAGCTGTTAAAGCTTTCATGACAGCCGATCTTCCACATGAACTGATCGAACTTCTTGAAAAGATAGTTCTTCAAAATTCTGCTTTCAGTG GGAATTTCAATCTGCAAAACCTGCTCATCTTGACTGCCATCAAGGCTGATCCATCAAGAGTTATGGATTACGTTAATAGGCTAGACAACTTTGATGGACC TGCAATTGGGGAGGTGGCTGTGGAAGCTCAGTTGTATGAAGAAGCATTTGCCATTTTCAAGAAGTTCAATCTTAATGTTCAGGCCGTCAATGTCCTGCTG GATAATATTCATAGCATTGATCGAGCTGTGGAGTTTGCATTCCGGGTGGAAGAAGAAGCTGTCTGGAGCCAAGTGGCCAAGGCCCAACTGCGAGAGGGGC TAGTAAGTGAAGCAATTGAGTCCTTTATCCGTGCAGATGATGCTACTCAATTCTTGGAAGTCATAAAGGCAGCTGAGGATGCAAATGTATATCATGACTT GGTGAAGTACCTTCTAATGGTGAGGCAAAAGTCAAAGGAGCCCAAGGTTGACAGTGAGCTCATATATGCATATGGTAAAATTGATCAACTGGGTGAAATT GAAGAATTTATTCTCATGCCTAATGTTGCTAATCTCCAAAATGTTGGAGATCGTTTATATGACGAAGCCCTGTATGAGGCAGCAAAGATTATATTTAGAT TTATTAGTAACTGGGCTAAGCTAGCTGTCACACATGTTAAGCTAAAAGAGTTTCAAAGTGCTGTTGACGCAGCTCGAAAAGCAAACAGCTCGAAAACATG GAAAGAAGTCTGCTTTGCTTGTGTTGATTCTGAGGAATTCCGCTTGGCTCAGATATGCGGTCTCAACATTATCATACAGGTTGATGATTTGGAAGAGGTC AGTGAGTATTACCAGAACAGGGGATGCTTTAGCGAGCTCATCTCTTTAATGGAAAGTGGGCTTGGTTTGGAGCGTGCACATATGGGCATCTTCACTGAGT TGGGAGTTTTATATGCGAGATACCGCCCTGAGAAGCTTATGGAGCACATCAAGTTGTTCTCAACTCGTCTCAACATCCCCAAGCTAATACGTGCTTGTGA TGAACAACAGCATTGGAAGGAACTGACATATTTATACATCCAATATGATGAATTTGACAATGCTGCAACCACTATAATGAACCACTCTCCAGAAGCATGG GACCACATGCAATTTAAAGATGTTGTAGTGAAAGTTGCAAATGTTGAGCTCTACTACAAGGCTGTGCACTTTTATTTGCAAGAGCATCCAGACCTAATCA ATGATCTTCTTAATGTGATTGCACTTCGTGTTGACCATACTCGAGTAGTGGACATAATGCGAAAGGCTGGTCAACTCCGTCTCATTAAGCCATACATGGT TGCTGTTCAGAGCAACAATGTCTCTGCTGTGAATGAAGCATTGAATGAAATTTATATTGAGGAGGAGGACTATGACAGACTTCATGAATCTATTGAGTTG CATGATAACTTTGACCAGATAGGCCTTGCACAGAAGATTGAGAAACATGAGCTTCTTGAGATGAGACGTGTTGCTTCTCATATATACAAGAAAGCAGGAA GGTGGAAGCAGTCAATTGCTTTGTCGAAGAAAGACAATCTTTACAAAGATTGTATGGAAACTTGTTCACAGTCTGGTGATCGTGAACTTTCAGAGGAGTT GCTTGTCTATTTCATCGAGCAGGGAAAGAAAGAGTGCTTTGCAGCTGCCCTCTTTGTTTGTTATGATTTGATCCGACCAGATGTTGCTATGGAGCTGGCA TGGATGAACAATATGATTGATTTTGCTTTCCCATATCTCTTGCAGTTTATCCGTGAGTACACAAGCAAAGTAGATGAGCTCATCAAGAGCAAACTTGAGG CTCTTAATGAGGCGAAGGCTAAAGAGAACGAGGAGAAGGACATGGTTGCTCAGCAGAATATGTATGCACAGTTGCTGCCCCTTGCTTTGCCTGCACCACC AATGCCTGGAATGGGTGGTCCAGGGATGAGTGGAGGTTTTGCACCACCTCCAATGGGTGGAATGGGAATGCCACCTTATGGCATGCCACCCATGGGCCCC TACTAA
AA sequence Show only first row Show all	>Potri.009G073300.1 pacid=42771781 polypeptide=Potri.009G073300.1.p locus=Potri.009G073300 ID=Potri.009G073300.1.v4.1 annot-version=v4.1 MAAANAPITMKEALTLPSLGINPQFINFTHVTMESEKYICIRETSPQNSVVIVDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE LKAKVKSHQMPEQVVFWKWISPKMLALVTQTSVYHWSIEGDSEPVKMFDRTANLQGNQIINYRCDPSEKWLVLIGIAQGPPERPQLVKGNMQLFSVDQQR SQALEAHAASFATFKVAGNESPSTLISFASRSFNAGQLTSKLHVIELGAVPGKPSFTKKQADLFFPPDFADDFPVSMQISQKYGLIYAITKQGLLFVYDL ETASAIYRNRISPDPIFLTTDASSVGGFYAVNRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFSQSKYKEAAELAAES PQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLVKTVDNDLALKIYIKARATPK VVAAFAERREFDKILIYSKQVGYNPDYLFLLQTILRTDPQAAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLE INLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLYIRALQHYTELPDIKRVIVNTHAIEPQALVEFFGTLSREWALDCMKDLLLVNLRGNLQIIVQTA KEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPD LTHYLFVNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIES GDNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWDKALSPDNEYRRQLIDQVVSTALPESKSPD QVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAIGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLL DNIHSIDRAVEFAFRVEEEAVWSQVAKAQLREGLVSEAIESFIRADDATQFLEVIKAAEDANVYHDLVKYLLMVRQKSKEPKVDSELIYAYGKIDQLGEI EEFILMPNVANLQNVGDRLYDEALYEAAKIIFRFISNWAKLAVTHVKLKEFQSAVDAARKANSSKTWKEVCFACVDSEEFRLAQICGLNIIIQVDDLEEV SEYYQNRGCFSELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW DHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDLLNVIALRVDHTRVVDIMRKAGQLRLIKPYMVAVQSNNVSAVNEALNEIYIEEEDYDRLHESIEL HDNFDQIGLAQKIEKHELLEMRRVASHIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGDRELSEELLVYFIEQGKKECFAAALFVCYDLIRPDVAMELA WMNNMIDFAFPYLLQFIREYTSKVDELIKSKLEALNEAKAKENEEKDMVAQQNMYAQLLPLALPAPPMPGMGGPGMSGGFAPPPMGGMGMPPYGMPPMGP Y

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	0	1
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	3.00	0.9304
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	3.16	0.9374
AT2G07360			SH3 domain-containing protein ...		Potri.018G149400 [exp]	3.87	0.9190
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	4.47	0.8993
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	5.56	0.8784
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	6.48	0.9305
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.003G056300 [exp]	8.71	0.9255
AT1G62020			Coatomer, alpha subunit (.1)		Potri.015G069700 [exp]	8.77	0.9163
AT1G60070			Adaptor protein complex AP-1, ...		Potri.006G092800 [exp]	9.79	0.9075
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	12.12	0.8843

Compare expression of checked genes

Potri.009G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.