Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SIRANBP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 267 / 3e-91 RANBP1 RAN binding protein 1 (.1) AT2G30060 261 / 4e-89 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G07140 254 / 3e-86 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT3G15970 52 / 6e-08 NUP50 (Nucleoporin 50 kDa) protein (.1) AT1G52380 50 / 2e-07 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278900 [exp] 309 / 8e-108 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.006G102400 [exp] 273 / 3e-93 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.016G119800 [exp] 268 / 1e-91 AT5G58590 265 / 2e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 54 / 3e-08 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037242 [exp] 258 / 1e-87 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10035656 [exp] 256 / 4e-87 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10035655 [exp] 256 / 2e-86 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10037241 [exp] 252 / 2e-85 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10037931 [exp] 53 / 5e-08 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00638 [poplar] [flax] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Potri.009G073400.1 pacid=42772766 polypeptide=Potri.009G073400.1.p locus=Potri.009G073400 ID=Potri.009G073400.1.v4.1 annot-version=v4.1 ATGGCAAGCACAGAACCCGAACACGAGCACAGAGAAGATGAGGAAGCTCCGGCTGGCGAAGACGAAGACACCGGTGCTCAGGTTGCTCCGATCGTCAAGC TCGAAGAAGTTGCTGTCTCTACCGGTGAAGAAGATGAAGATGCGATCCTCGATCTGAAATCGAAGCTTTATAGATTTGATAAGGACGGGAATCAGTGGAA AGAGAGAGGTGCTGGCACTGTCAAGTTATTGAAGCATAAAGAGTCTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAGACTCTCAAGATCTGCGCTAAT CATCTCGTGCTGCCGACTATGTCCGTGCAGGAGCACGCAGGGAATGATAAGTCGTGTGTGTGGCACGCTACAGATTTCGCTGATGGTGAATTGAAGGATG AGTTGTTCTGCATTCGTTTCGCATCTGTTGAAAATTGCAAAACCTTTATGGAAATGTTTCAAGAAGTTGCTGAATCCCAAGAGAGCAAAGAGGAAAATGA GGATGCAACTGTTGCTGCTGATGCATTGGAGAAGTTGAGTGTTGAAGGGAAGAAAACTGAGGAGAATGCTGGCGAAGAGGCACCTGCTGCAACCAAGAAT GAGGAAACTAAGACTGATACAGATAAGAAAGGGGAGAAGCCTGCTCCCTCAACTTGA
AA sequence Show only first row Show all	>Potri.009G073400.1 pacid=42772766 polypeptide=Potri.009G073400.1.p locus=Potri.009G073400 ID=Potri.009G073400.1.v4.1 annot-version=v4.1 MASTEPEHEHREDEEAPAGEDEDTGAQVAPIVKLEEVAVSTGEEDEDAILDLKSKLYRFDKDGNQWKERGAGTVKLLKHKESGKVRLVMRQSKTLKICAN HLVLPTMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFASVENCKTFMEMFQEVAESQESKEENEDATVAADALEKLSVEGKKTEENAGEEAPAATKN EETKTDTDKKGEKPAPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.009G073400 [exp]	0	1	Pt-SIRANBP.2
AT1G26880			Ribosomal protein L34e superfa...		Potri.004G029400 [exp]	1.73	0.9345
AT1G26880			Ribosomal protein L34e superfa...		Potri.001G195101 [exp]	9.89	0.9029
AT1G23220			Dynein light chain type 1 fami...		Potri.010G108700 [exp]	11.22	0.8851
AT5G60150			unknown protein		Potri.005G131500 [exp]	15.09	0.8803
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.016G085800 [exp]	18.65	0.9019	Pt-RPS23.5
AT3G59540			Ribosomal L38e protein family ...		Potri.007G131800 [exp]	19.89	0.8974
AT1G16000			unknown protein		Potri.003G183501 [exp]	20.34	0.8758
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.005G206300 [exp]	23.66	0.8886	Pt-RPS12.3
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Potri.003G096800 [exp]	27.01	0.8838	Pt-DAD1.1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.002G124100 [exp]	27.42	0.8602

Compare expression of checked genes

Potri.009G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.