Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07120 434 / 4e-151 unknown protein AT4G18570 278 / 6e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 258 / 9e-78 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 231 / 5e-70 hydroxyproline-rich glycoprotein family protein (.1) AT4G04980 62 / 3e-10 unknown protein AT1G61080 56 / 5e-08 Hydroxyproline-rich glycoprotein family protein (.1) AT1G11070 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279000 [exp] 743 / 0 AT1G07120 440 / 2e-153 unknown protein Potri.004G054900 [exp] 310 / 2e-99 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G460300 [exp] 299 / 1e-93 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 288 / 3e-91 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 293 / 4e-91 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 260 / 8e-78 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G003100 [exp] 243 / 1e-74 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.011G047100 [exp] 76 / 2e-14 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 66 / 3e-11 AT4G04980 387 / 4e-121 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031863 [exp] 474 / 2e-166 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 332 / 1e-111 AT1G07120 267 / 3e-87 unknown protein Lus10000986 [exp] 306 / 2e-98 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 301 / 6e-96 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 298 / 5e-95 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 260 / 1e-77 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 258 / 8e-77 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10013931 [exp] 233 / 2e-70 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038307 [exp] 83 / 1e-16 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 67 / 2e-11 AT4G04980 347 / 1e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G073600.2 pacid=42772319 polypeptide=Potri.009G073600.2.p locus=Potri.009G073600 ID=Potri.009G073600.2.v4.1 annot-version=v4.1 ATGCGACTCCAATCTTCTTCTGTTATTATTTTGATGAAAGCAGAACGAGAGAGTAAAATGCGGAAAGAAGAGGATGAATCATTGATCATCTACCTCAAGA AAGAAGTCGAAGCTGCTCTGCTAAGGACTGATTCTCTGGAGAAAGAAAATCAGGAATTACAACAGGAAGTAGTTCGTCTAAAAGCACAGATAAGTTCACT CAAAGCACACGACAATGAGAGAAAATCCATGCTTTGGAAGAAGTTACAGAACCCCATTGACAGCAGCAAAACTGATGTATTTCTGCAGAAACAATCAGAT TTTGTCAAAGTGAGTGAGGAACATTCAAGTCCAAGACCGAGCATACAGGAATTACCATCAAGAAAAGAGAAACTGGCAAAAGTACCAAATCCACCACCAA GGCCTACTTCTGTAGCCCCTTCATCACCCAAGGAAGTGAACAGCAATAAATTGTCACCAGCACCAGCACCAGCACCAGCACCACCACCTCCACCTCCGCC ACCGAAGATGTCTGTTGGGTCAAAAACAGTGCGCCGCGTGCCAGAAGTCGCCGAGTTCTATCGTTTGGTTACAAGGAGAGATGTCCACATGGAGAACAGA ATCAATTCAGCGGCTATTCCAGTGGTTGCATTTACTCCTAGCATGATTGGAGAAATTGAGAATCGTTCCACTTATCTTTCTGCTATAAAATCGGATGTGG AAAAACAGAAGGAATTTATCAATTTCCTAATCAAAGAAGTGGAGTCTGCAGCCTTCAAAGAAATATCTGATGTTAAGGCATTTGTGAAATGGCTGGATGA TGAATTATCATCTTTGGTTGACGAAAGGGCAGTATTGAAGCATTTCCCACAATGGCCAGAACGAAAAGCAGATGCTTTGCGAGAAGCTGCTTTCAACTAC CGAGACCTAATAAACCTCGAGTCTGAAGTTTCATCATTCCAGGACAATAAAAAAGAGCCTTTGATCCGAGCCCTGGGAAGAATGCAAGCATTGCAAGACA GGTTGGAGCGAAGTGTAAACAATACAGAAAGGACTAGAGAGAGCATGATCAAGAGATACAGGGATCTTCAGATCCCATGGGAATGGTTGCTGAACACAGG GTTGATCGGTCAGATGAAATTAAGTTCTTTGAGGCTAGCCAAGGATTACTTGAAAAGGATAACTAAAGAGCTGCAGCTTAATGAATGCTCAGGAGAGGAG AATCTTCTGCTTCAAGGAGCTAGATTTGCCTATCGTGTACACCAGTTCGCAGGTGGTTTTGATGCTGAGACCACACATGCATTTCAAGAGCTAAAGAAGA TTGGCATGGGTAGTCTCAAACAATAG
AA sequence Show only first row Show all	>Potri.009G073600.2 pacid=42772319 polypeptide=Potri.009G073600.2.p locus=Potri.009G073600 ID=Potri.009G073600.2.v4.1 annot-version=v4.1 MRLQSSSVIILMKAERESKMRKEEDESLIIYLKKEVEAALLRTDSLEKENQELQQEVVRLKAQISSLKAHDNERKSMLWKKLQNPIDSSKTDVFLQKQSD FVKVSEEHSSPRPSIQELPSRKEKLAKVPNPPPRPTSVAPSSPKEVNSNKLSPAPAPAPAPPPPPPPPKMSVGSKTVRRVPEVAEFYRLVTRRDVHMENR INSAAIPVVAFTPSMIGEIENRSTYLSAIKSDVEKQKEFINFLIKEVESAAFKEISDVKAFVKWLDDELSSLVDERAVLKHFPQWPERKADALREAAFNY RDLINLESEVSSFQDNKKEPLIRALGRMQALQDRLERSVNNTERTRESMIKRYRDLQIPWEWLLNTGLIGQMKLSSLRLAKDYLKRITKELQLNECSGEE NLLLQGARFAYRVHQFAGGFDAETTHAFQELKKIGMGSLKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07120			unknown protein		Potri.009G073600 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	2.00	0.9483
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	3.46	0.9300
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	4.47	0.9320	Pt-CESA2.1
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	5.91	0.9141	BGAL9.1
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.005G065200 [exp]	6.00	0.9246
					Potri.005G114500 [exp]	7.34	0.9147
AT1G52140			unknown protein		Potri.014G139900 [exp]	8.12	0.8548
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	8.30	0.8862
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.012G006200 [exp]	9.48	0.8972
AT3G19150		ACK1, ICK4, KRP...	ARABIDOPSIS CDK INHIBITOR 1, K...		Potri.005G137500 [exp]	9.74	0.8930

Compare expression of checked genes

Potri.009G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.