Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07110 1170 / 0 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) AT3G30200 107 / 3e-24 Plant transposase (Ptta/En/Spm family) (.1) AT5G04120 55 / 5e-08 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279100 [exp] 1398 / 0 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.007G040700 [exp] 48 / 1e-05 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042278 [exp] 1243 / 0 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031299 [exp] 1240 / 0 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 1238 / 0 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031869 [exp] 1207 / 0 AT1G07110 1097 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10026380 [exp] 1197 / 0 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10014360 [exp] 54 / 2e-07 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 52 / 7e-07 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1) CL0369 [poplar] [flax] GHD PF00686 [poplar] [flax] CBM_20 Starch binding domain CL0023 [poplar] [flax] P-loop_NTPase PF01591 [poplar] [flax] 6PF2K 6-phosphofructo-2-kinase
Representative CDS sequence Show only first row Show all	>Potri.009G073800.1 pacid=42770908 polypeptide=Potri.009G073800.1.p locus=Potri.009G073800 ID=Potri.009G073800.1.v4.1 annot-version=v4.1 ATGGGCACTGGTTTGTCAAAGGACGCAGACGGCAGCTCGCACGGAAATGAAGGAGAAGAAAATCCAGACCACGCAGGAGGTCAACTTTATGTTTCTCTTA AAATGGAGAATTATAGACTTAAAGCGGAACTCATCCCTCATGTCTACGGTTCCGTGCCTCTTGTTGGCTCCTGGGATTCTTCTAAAGCTCTTTCCATGGA ACCTGAATCGGCTTCAATGTGGGAATTAAGCTTTGTCGTTCCATCTAATCACGAAACTTTGGATTTCAAGTTCCTGTTGAAGCCAAAGTACAGTAATAGC CCTTGTGTGGTGGAGGAGGGTCCAAACCGGCTTCTTACCAGGGGAACATTGCAAGGGGAATCGAGGCTGGCAGTATTCAAGAATGGCGATGTGACTGTGG AGTTTAGGGTGTTTATTAAAGCTGATAGAGTTTCACCTTTTGATCTTGCGGCCAGTTGGAGAGTTTATCAGGAGAATCTCCAGCCTTCAACTGTTCGTGG AATTCCTGATGTCAGCATCAATTCTGTACCAATGGCAGGAATTGAGAATGGCTCTCCAGCTAGTTTGGAGCTTGATCTTGAACATTATGTTGTCCCAGCT CCTTCAACTTCTGCAAACTCTGCTTTCGTGTACGCAGCTAACAATACAGAGAATCCAAGGTTTTCCAATGTTGATTGCCCAGGCAATGCTTCATATTCCT TCAAGGATAGTGGTGTTTCTGCTGATCAACCTACAACTATTAAGGAGATGGAGGTTGTTATCCCAGATCCATCCAAGGTATATTCTGGTTCCGGCATGGT TGAATCAAAATCAGTGGGGACATTTTCCTCTTTGCAAAAGCAAGATGGTCACAGGGGGCTCTTTGTGGATAGAGGTGTTGGATCTCCTAGATTAGTTAAG TCATCTAGTTCGAGTGCTTTTTCTTGTGATCTCAAACTGGACACTGAAACCAAGAATTCAATGCCAGCAGCTGCTGGAGCTGTTGCTGCTGGAGCTGTTG CTGATCAGATGCTTGGACCAAAGGAGGATAGGCATTTGGCAATTGTTCTGGTTGGTTTACCTGCCCGAGGCAAAACTTTTACTGCAGCTAAACTTACTAG ATATCTTCGTTGGTTGGGTCATGATACCAAGCACTTCAATGTTGGAAAGTATCGGCGCCTTAAGCATGGAGCTAATCAGTCTGCTGATTTTTTCCGAGCT GACAACCCTGAAGGAATGGAGGCACGAAATGAGGTAGCAGCATTGGCAATGGATGATATGATTGCCTGGATGCAAGAAGGTGGCCAGGTAGGAATATTTG ATGCCACAAACAGTACCAGGAAAAGAAGGAACATGCTGATGAAAATGGCTGAAGGGAAGTGCAAGCTGCAGATTATTTTTTTGGAGACACTATGCAATGA TGAACACATAATTGAAAGAAATATACGTCTTAAAATTCAACAAAGCCCTGACTATGCTGAACAGCCAGATTTCGAAGCTGGATTGCAAGACTTCAAAAGT CGGCTATCTAATTATGAAAAGGTTTATGAACCAGTAGAAGAAGGATCTTATATCAAGATGATTGATATGGTCAGTGGACATGGTGGACAGATACAAGTTA ACAATATCAGTGGCTACCTTCCTGGGAGAATTGTTTTTTTCTTAGTGAATACACACCTTACACCACGCCCAATATTACTTACCAGGCATGGAGAGAGTCG AGATAATGTTAGAGGTAGAATTGGTGGTGATACTGTATTGAGTGATGCTGGAGAAATTTATGCGAAGAAACTTGCTAACTTTGTCGAGAAACGACTGAAA TCGGAAAAGGCAGCATCTATTTGGACCAGCACACTTCAAAGGACAATTATAACAGCAAGTCCTATCATTGGATTTCCCAAGATTCAATGGCGTGCCCTTG ATGAGATAAATGCTGGAGTATGTGATGGAATGACATATGAAGAGATTAAGAAGAACATGCCTGAGGAATATGAGGCACGCAGGAAGGACAAGCTGAGGTA TCGATACCCTCGTGGAGAATCTTATCTCGATGTCATCCAAAGGCTAGAGCCTGTAATTATTGAACTAGAAAGACAACGGGCTCCTGTTGTAGTCATCTCT CACCAGGCTGTGTTGAGAGCGTTATATGCTTATTTTGCTGATAGGCCTCTAAAAGAAATTCCACATATCGAGGTGCCACTTCATACAATAATAGAGATAC AAATGGGAGTTACTGGAGTCCAGGAGAAAAGATACAAGCTCATGGACTGA
AA sequence Show only first row Show all	>Potri.009G073800.1 pacid=42770908 polypeptide=Potri.009G073800.1.p locus=Potri.009G073800 ID=Potri.009G073800.1.v4.1 annot-version=v4.1 MGTGLSKDADGSSHGNEGEENPDHAGGQLYVSLKMENYRLKAELIPHVYGSVPLVGSWDSSKALSMEPESASMWELSFVVPSNHETLDFKFLLKPKYSNS PCVVEEGPNRLLTRGTLQGESRLAVFKNGDVTVEFRVFIKADRVSPFDLAASWRVYQENLQPSTVRGIPDVSINSVPMAGIENGSPASLELDLEHYVVPA PSTSANSAFVYAANNTENPRFSNVDCPGNASYSFKDSGVSADQPTTIKEMEVVIPDPSKVYSGSGMVESKSVGTFSSLQKQDGHRGLFVDRGVGSPRLVK SSSSSAFSCDLKLDTETKNSMPAAAGAVAAGAVADQMLGPKEDRHLAIVLVGLPARGKTFTAAKLTRYLRWLGHDTKHFNVGKYRRLKHGANQSADFFRA DNPEGMEARNEVAALAMDDMIAWMQEGGQVGIFDATNSTRKRRNMLMKMAEGKCKLQIIFLETLCNDEHIIERNIRLKIQQSPDYAEQPDFEAGLQDFKS RLSNYEKVYEPVEEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRDNVRGRIGGDTVLSDAGEIYAKKLANFVEKRLK SEKAASIWTSTLQRTIITASPIIGFPKIQWRALDEINAGVCDGMTYEEIKKNMPEEYEARRKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVVIS HQAVLRALYAYFADRPLKEIPHIEVPLHTIIEIQMGVTGVQEKRYKLMD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	0	1
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.018G118143 [exp]	5.29	0.7642
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G069001 [exp]	8.66	0.7650
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	12.96	0.7180	XLG.1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.009G058100 [exp]	13.07	0.6742
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	13.56	0.7459
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	16.12	0.7192
AT1G33360			ATP-dependent Clp protease (.1...		Potri.013G089500 [exp]	18.76	0.6887
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.009G062600 [exp]	22.20	0.7038
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	24.49	0.7114	Pt-BZO2.3
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	25.92	0.7492

Compare expression of checked genes

Potri.009G073800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.