Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ZIP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30080 360 / 2e-124 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT3G12750 162 / 4e-47 ZIP1 zinc transporter 1 precursor (.1) AT2G04032 158 / 3e-45 ZIP7 zinc transporter 7 precursor (.1) AT1G31260 158 / 3e-45 ZIP10 zinc transporter 10 precursor (.1) AT4G19690 152 / 5e-43 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT1G05300 149 / 4e-42 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 148 / 1e-41 ZIP3 zinc transporter 3 precursor (.1) AT4G19680 145 / 1e-40 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT1G10970 145 / 5e-40 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT5G62160 142 / 2e-39 AtZIP12, ZIP12 ,XLG2 zinc transporter 12 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279300 [exp] 478 / 7e-171 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.010G134300 [exp] 178 / 6e-53 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.006G006800 [exp] 175 / 1e-51 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.006G006600 [exp] 174 / 1e-51 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.001G160400 [exp] 168 / 3e-49 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.015G117700 [exp] 161 / 7e-47 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.015G117900 [exp] 157 / 6e-45 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.010G173300 [exp] 155 / 4e-44 AT3G12750 339 / 2e-115 zinc transporter 1 precursor (.1) Potri.008G083100 [exp] 150 / 2e-42 AT3G12750 350 / 7e-120 zinc transporter 1 precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031307 [exp] 251 / 5e-84 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10024107 [exp] 181 / 5e-54 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041613 [exp] 177 / 1e-52 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10041647 [exp] 174 / 4e-51 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10014062 [exp] 162 / 1e-46 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10019854 [exp] 157 / 5e-46 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10006935 [exp] 159 / 9e-46 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1) Lus10040615 [exp] 152 / 5e-43 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10031872 [exp] 140 / 5e-40 AT2G30080 157 / 6e-47 ZIP metal ion transporter family (.1) Lus10031306 [exp] 132 / 2e-37 AT2G30080 170 / 2e-52 ZIP metal ion transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF02535 [poplar] [flax] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Potri.009G074100.1 pacid=42771896 polypeptide=Potri.009G074100.1.p locus=Potri.009G074100 ID=Potri.009G074100.1.v4.1 annot-version=v4.1 ATGGCAGCTGCTTGTTTGATCGACGCAACCCGCTCCACAACCTGCAGAGACACACAAGCAGCAACCCACCTAAAACTAATCTCCATCTTAATAATCTTCT TTACAAGCATAATTGGCATCTCTTTTCCAGTTCTCTTAGCTCGCTATTTCCAAGGCAAACCCGTCTACGACAAGGCAACTCTAATCATCAAGTGTTTCGC GGCAGGAGTAATCCTCTCCACTTCACTAGTCCACGTACTCCCCGACGCTTTCGGTGCACTCTCTGATTGCCACGTAGCATCAAAACATCCCTGGAAAGAT TTTCCTTTTGCAGGTTTAATTACTTTAATTGGGGTTTTACTAGCCCTATTAGTTGATTTAACAGCAAGTGCACACGTGGAGCAACACGGGCAAGGGCATG GTGACGGTGACGGTGACGGGGAGTACACGGTTGTTGGGACACAGGAGGAAATGGTGGGAAAGAAAGTGAGTGACATGTCGGTTAGGGTGGAGATCATGGG AGAGGTGGATTTGGTTAAGGTAAAGCAGAGGTTGGTGTCGCAGGTTTTGGAAATTGGGATTATTTTTCACTCGGTGATAATTGGGGTTACTATGGGTATG TCACAAAATAAGTGTACTATTAGACCTCTTGTTGCTGCCCTTGCTTTTCATCAGATTTTTGAAGGGATGGGTCTTGGCGGCTGCATTGCTCAGGCAGGGT TTGGCTTCGGAACAGTGGCCTACATGTGTTTTATGTTTGCAGTGACTACGCCGATGGGGATAGTCTTAGGGATGATCATATTTTCAATAACCGGTTACGA CGACAGTAACCCCAATGCCTTGATCATGGAAGGATTACTGGGGTCATTATCTTCAGGTGTACTTGTATACATGGGTCTTGTTGATCTCATAGCTGTTGAT TTCTTCCATAACAAGCTGATGAGTTCTGCTCCATGGTTGAAGAAGGCATCATTCATCGCACTAGCTCTTGGCTCTACTTCAATGTCTATCCTTGCTCTTT GGGCTTGA
AA sequence Show only first row Show all	>Potri.009G074100.1 pacid=42771896 polypeptide=Potri.009G074100.1.p locus=Potri.009G074100 ID=Potri.009G074100.1.v4.1 annot-version=v4.1 MAAACLIDATRSTTCRDTQAATHLKLISILIIFFTSIIGISFPVLLARYFQGKPVYDKATLIIKCFAAGVILSTSLVHVLPDAFGALSDCHVASKHPWKD FPFAGLITLIGVLLALLVDLTASAHVEQHGQGHGDGDGDGEYTVVGTQEEMVGKKVSDMSVRVEIMGEVDLVKVKQRLVSQVLEIGIIFHSVIIGVTMGM SQNKCTIRPLVAALAFHQIFEGMGLGGCIAQAGFGFGTVAYMCFMFAVTTPMGIVLGMIIFSITGYDDSNPNALIMEGLLGSLSSGVLVYMGLVDLIAVD FFHNKLMSSAPWLKKASFIALALGSTSMSILALWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	0	1	ZIP6.2
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034600 [exp]	1.73	0.8415
					Potri.007G016466 [exp]	2.44	0.8374
AT1G54200			unknown protein		Potri.003G063400 [exp]	4.24	0.8146
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	4.89	0.7982
AT2G24170			Endomembrane protein 70 protei...		Potri.018G106600 [exp]	5.19	0.8314
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	5.29	0.8233
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.002G226300 [exp]	8.94	0.7634
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G018500 [exp]	10.24	0.8157
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.010G071200 [exp]	10.24	0.7877
AT1G11380			PLAC8 family protein (.1)		Potri.004G026700 [exp]	11.61	0.7767

Compare expression of checked genes

Potri.009G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.