Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51780 196 / 4e-62 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G52060 160 / 3e-47 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 150 / 5e-44 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 147 / 1e-42 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G14360 123 / 5e-35 Ubiquitin-like superfamily protein (.1) AT5G40630 110 / 1e-29 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279500 [exp] 410 / 3e-146 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.016G121200 [exp] 186 / 4e-58 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1) Potri.015G135500 [exp] 174 / 2e-52 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 172 / 2e-51 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 162 / 8e-49 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.003G121500 [exp] 156 / 4e-46 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 150 / 4e-43 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.001G339100 [exp] 131 / 6e-38 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027822 [exp] 219 / 2e-70 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10005051 [exp] 215 / 1e-67 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027420 [exp] 172 / 1e-51 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10023279 [exp] 162 / 2e-49 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10038882 [exp] 160 / 3e-47 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 157 / 3e-46 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10003393 [exp] 153 / 2e-45 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1) Lus10005772 [exp] 149 / 4e-43 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10029598 [exp] 130 / 2e-36 AT5G52060 195 / 8e-61 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 130 / 2e-36 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF02179 [poplar] [flax] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Potri.009G074300.1 pacid=42772472 polypeptide=Potri.009G074300.1.p locus=Potri.009G074300 ID=Potri.009G074300.1.v4.1 annot-version=v4.1 ATGAAAAGCTCAACTTCAAAAGGTACAGAGACAAGGGAGTTTAACTACAGGGAGATAGACTGGGAACTTAGGCCTGGTGGCATGCTTGTTCAAAAGAGAG ATGTTGGGGTTGGCTCTTCTGGGCCTATGATCAAGATCAAGGTCTCTCATGGCTCATGTCACTATGATACTGATGTCCCTGCTCAATCCACTTTTGGGGA TTTGAAAAAGGTTCTTGCCAATGAGACTGGCTTGGAGCCTCAAGAGCAGAGATTATTGTTTAGAGGCAAAGAAAGGGAGAATGATGAATATTTGCACATG GTAGGTGTAAAAGACATGTCAAAGGTGATACTTTTTGAGGATCCAGCTAGCAAAGAGAGGAAGCTCGAGGAGATGAAGAGAAATCAGGGTACGTTTGAAG CCTGTGAAGCTGTTGCCAGAGTGAGGGCAGAGGTTGATAAACTTTGCGAGAAGGTTGTTGCATTGGAGACAACATTTTGCAGTGGCACTGCGATTGCAGA CAAAGAATTTGTTGTCTTGACAGAATTGCTTATGATACAGTTGCTTAAACTGGATTCAATTGAGGCTAATGGAGAAGCAAAGGTGCAGAGAAGGATTGAG GTTCGTCGAATCCAGAGCTTTGTGGACACTCTTGACAATTTGAAAGTACGAAACTCTAACCCCTTCAGCAATAGTAGCAGTGCAGTATCAGTGACTACCA AATGGGAGACATTTGCGTCTGGAGTTGGAAGCCTGAGTGCCCCAGTTCCAATACAATCTGCCACTAAAGTAACTCAGGACTGGGAGCTGTTTGACTAA
AA sequence Show only first row Show all	>Potri.009G074300.1 pacid=42772472 polypeptide=Potri.009G074300.1.p locus=Potri.009G074300 ID=Potri.009G074300.1.v4.1 annot-version=v4.1 MKSSTSKGTETREFNYREIDWELRPGGMLVQKRDVGVGSSGPMIKIKVSHGSCHYDTDVPAQSTFGDLKKVLANETGLEPQEQRLLFRGKERENDEYLHM VGVKDMSKVILFEDPASKERKLEEMKRNQGTFEACEAVARVRAEVDKLCEKVVALETTFCSGTAIADKEFVVLTELLMIQLLKLDSIEANGEAKVQRRIE VRRIQSFVDTLDNLKVRNSNPFSNSSSAVSVTTKWETFASGVGSLSAPVPIQSATKVTQDWELFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	1.41	0.9427
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	2.00	0.9218
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.007G081000 [exp]	3.74	0.9115	SK3
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	4.00	0.9277	Pt-SAM1.1
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	5.09	0.9017
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.012G119600 [exp]	6.00	0.9018
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	6.32	0.9216
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.015G142000 [exp]	7.34	0.9121
AT2G40410			Staphylococcal nuclease homolo...		Potri.008G074800 [exp]	7.48	0.8774
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Potri.013G083400 [exp]	7.48	0.9067	Pt-KT2.2

Compare expression of checked genes

Potri.009G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.